| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 18,880,981 – 18,881,087 |
| Length | 106 |
| Max. P | 0.970655 |
| Location | 18,880,981 – 18,881,087 |
|---|---|
| Length | 106 |
| Sequences | 3 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 81.82 |
| Mean single sequence MFE | -22.29 |
| Consensus MFE | -15.57 |
| Energy contribution | -17.14 |
| Covariance contribution | 1.57 |
| Combinations/Pair | 1.20 |
| Mean z-score | -2.69 |
| Structure conservation index | 0.70 |
| SVM decision value | 1.66 |
| SVM RNA-class probability | 0.970655 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 18880981 106 - 27905053 CAGGUAAUAAUAUAUAUAGCAAAU-----ACCAUUCAAUAGCCUUAUCGCCGAAGUGGCAACAGUUGUCGCAUUGAACACUAAUUGCCAUCAAUCAAAAUGCCAAAUCAUU ..((((............((((.(-----(...((((((.((......))....((((((.....))))))))))))...)).))))............))))........ ( -16.95) >DroEre_CAF1 548 108 - 1 CAGGUAAUCAUAU---GGGCACUUUUCCCAACAUUCAAUGGCCUUAUCACCACAGUGACAACGGCUGUUGAAUUGAACACUAAUUGCCAUCAAUCAAAAUACCAAUUAAUU ..((((((....(---(((.......))))..(((((((((((((.((((....)))).)).))))))))))).........))))))....................... ( -26.70) >DroYak_CAF1 558 108 - 1 CAGGUAAUCGUAU---UGGCAAUUUUCCCAACUUUCAAUGGCCUUAUCAGCACAGUGACAACAGUUGCUGAAUUGAACACUAAUUGCCAUCAAUCAAAAUACCAAUUAAUU ..((((.......---((((((((...(((........))).....((((..(((..((....))..)))..)))).....))))))))..........))))........ ( -23.23) >consensus CAGGUAAUCAUAU___UGGCAAUUUUCCCAACAUUCAAUGGCCUUAUCACCACAGUGACAACAGUUGUUGAAUUGAACACUAAUUGCCAUCAAUCAAAAUACCAAUUAAUU ..((((...........(((((((........((((((((((....((((....)))).....))))))))))........)))))))...........))))........ (-15.57 = -17.14 + 1.57)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:38:57 2006