| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 18,865,177 – 18,865,268 |
| Length | 91 |
| Max. P | 0.789497 |
| Location | 18,865,177 – 18,865,268 |
|---|---|
| Length | 91 |
| Sequences | 4 |
| Columns | 104 |
| Reading direction | forward |
| Mean pairwise identity | 80.92 |
| Mean single sequence MFE | -30.45 |
| Consensus MFE | -20.29 |
| Energy contribution | -21.35 |
| Covariance contribution | 1.06 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.90 |
| Structure conservation index | 0.67 |
| SVM decision value | 0.58 |
| SVM RNA-class probability | 0.789497 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 18865177 91 + 27905053 GGCAGACACGGCAAAGACAACUCGGCUGUAGCUGACUUGGCCCACUGCCACUGCCAGUACUGG-----------CUUCCACU--ACUGUUCGGGCCAAGACAAA ..(((..(((((..((....))..)))))..))).((((((((...((....))(((((.(((-----------...))).)--))))...))))))))..... ( -34.30) >DroSec_CAF1 90054 102 + 1 GGCAGACACGGCAAAGACAACUCGGCUGCAGCUGACAUGGCCCACUGCCACUAGCAGUACCAGUACCACUGGUACCACCACU--ACUGUUCGGGCCAAGACAAA ..(((...((((..((....))..))))...)))...(((((((((((.....)))))(((((.....))))).........--.......))))))....... ( -34.00) >DroEre_CAF1 92547 86 + 1 GGCAGACAAGGCA-AGACAACUCGGCUGCAGCUGACUUGGCCCACUGCCACUGCCAC---CAGUG------------CCGCU--GCUGUUCGGGCCAAGACAAA .((.......)).-.......(((((....)))))((((((((((.(((((((....---)))))------------.....--)).))..))))))))..... ( -27.60) >DroYak_CAF1 96642 91 + 1 GGCAGACAAGGCA-AGACAACUUGGCUGCAUCUGACUUGGCCCACUGCCACUGCCAUUACUACUA------------CCGCUCCACUGUUCGGGCCAAGACAAA ..((((..((.((-((....)))).))...)))).((((((((...((....))...........------------..((......))..))))))))..... ( -25.90) >consensus GGCAGACAAGGCA_AGACAACUCGGCUGCAGCUGACUUGGCCCACUGCCACUGCCAGUACCAGUA____________CCACU__ACUGUUCGGGCCAAGACAAA ..(((...((((...((....)).))))...))).((((((((((((.......)))).....................((......))..))))))))..... (-20.29 = -21.35 + 1.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:38:47 2006