Locus 714

Sequence ID 3R_DroMel_CAF1
Location 2,525,481 – 2,525,598
Length 117
Max. P 0.528214
window1130

overview

Window 0

Location 2,525,481 – 2,525,598
Length 117
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 86.47
Mean single sequence MFE -26.42
Consensus MFE -18.02
Energy contribution -17.66
Covariance contribution -0.36
Combinations/Pair 1.15
Mean z-score -1.75
Structure conservation index 0.68
SVM decision value -0.01
SVM RNA-class probability 0.528214
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 2525481 117 - 27905053
AUAACAAAAAAACGUAUGGACUCGGCUAC---CACAUCCCACAUCAACACCCAAUUGUUGACUAUGAACACCCGGAUCCGUCCAAGAACUAAGAGCUAAGGCUCCAUCGGGGCUAGCACC
.............(.(((((..(((....---..(((......((((((......))))))..))).....)))..))))).)...........(((..((((((...)))))))))... ( -25.20)
>DroSec_CAF1 54843 120 - 1
AUAACAAAAAAACCUAUGGACUCGGCUACCACCACAUCCCACAUCAGCACCCAGUUGAUGACUAUGAACACCCGGAUCCGUCCAAGAACUAAAAGCUAGGGCUCCUUAAGGGCUAGCACC
................(((((..((......))..((((..(((((((.....))))))).....(......)))))..)))))..........(((..(((((.....))))))))... ( -25.90)
>DroSim_CAF1 53784 120 - 1
AUAACAAAAAAACCUAUGGACUAGGCAACCACCACAUCCCACAUCAGCACCCAGUUGUUGACUAUGAACACCCGGAUCCGUCCAAGAACUUAAAGCUAGGGCUCCAUCAGGGCUAGCACC
................(((((..((......))..((((....((((((......))))))....(......)))))..)))))..........(((..(((((.....))))))))... ( -22.30)
>DroEre_CAF1 54579 115 - 1
AUAACAAAAACCCUCAUGGAUUUGGCUAC---CACAUCCCAAAUCAACACCGUCUUGUUGACUAUGACAACCCGGAUCCGUCCGAGAACCAAGAGCCA-GGCUCCAU-AGGGCUAGCACC
..........((((.((((((((((((..---...........((((((......))))))...........((((....)))).........)))))-)).)))))-))))........ ( -30.90)
>DroYak_CAF1 56113 115 - 1
AUAACAAAAAA-CUCAUGGAUUUGGCUUC---CACAUCCCAAAUCAACACCCAGUUGUUGACUAUGACAACCCGGAUCCGUCUGAGAACUAAGAGCUA-GGCUCCAUUAGGGCUAGCACC
...........-(((((((((((((....---..(((......((((((......))))))..))).....)))))))))..))))........((((-(.((......)).)))))... ( -27.80)
>consensus
AUAACAAAAAAACCUAUGGACUCGGCUAC___CACAUCCCACAUCAACACCCAGUUGUUGACUAUGAACACCCGGAUCCGUCCAAGAACUAAGAGCUA_GGCUCCAUCAGGGCUAGCACC
................(((((..((..........((((....((((((......))))))....(......))))))))))))..........(((..(((((.....))))))))... (-18.02 = -17.66 +  -0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:03 2006