Locus 7131

Sequence ID 3R_DroMel_CAF1
Location 18,777,593 – 18,777,701
Length 108
Max. P 0.991114
window11534

overview

Window 4

Location 18,777,593 – 18,777,701
Length 108
Sequences 6
Columns 108
Reading direction forward
Mean pairwise identity 92.65
Mean single sequence MFE -28.66
Consensus MFE -25.60
Energy contribution -26.22
Covariance contribution 0.61
Combinations/Pair 1.11
Mean z-score -2.27
Structure conservation index 0.89
SVM decision value 2.25
SVM RNA-class probability 0.991114
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 18777593 108 + 27905053
AACUGAGCACACUCAUUACAGACGCGAAUGCAUUUUAAAAGCGGUAUUAAUAAUGCAUUACUUUAAGCUGUGAUUAUUUAAUGGCGGCUUAAGGUCGGGAAAAUGUCA
...((((....)))).....((((..((((((((((((........)))).))))))))((((((((((((.(((....))).))))))))))))........)))). ( -29.60)
>DroSec_CAF1 3185 108 + 1
AACUGAGCACACUCAUUACAGACGCGAAUGCAUUUUAAAAGCGGUAUUAAUAAUGCAUUACUUUAAGCUGUGAUUAUUUAAUGGCGGCUUAAGGUCGGGAAAAUUUCA
...((((....)))).......(.((((((((((((((........)))).))))))))((((((((((((.(((....))).)))))))))))))).)......... ( -28.30)
>DroSim_CAF1 3169 108 + 1
AACUGAGCACACUCAUUACAGACGCGAAUGCAUUUUAAAAGCGGUAUUAAUAAUGCAUUACUUUAAGCUGUGAUUAUUUAAUGGCGGCUUAAGGUCGGGAAAAUGUCA
...((((....)))).....((((..((((((((((((........)))).))))))))((((((((((((.(((....))).))))))))))))........)))). ( -29.60)
>DroEre_CAF1 3123 108 + 1
AACUGAGCACACUCAUUACAGACGCGAGUGCAUUUCAAAAGCGGCAUUAAUAAUGCAUUACUUUAAGCUGUGAUUAUUUAAUGGCGGCUUAAGGUCGGAAAAAUGUCA
...((((....)))).....((((..((((((((.................))))))))((((((((((((.(((....))).))))))))))))........)))). ( -28.43)
>DroYak_CAF1 3363 108 + 1
AACUGAGCACACUCAUUACAGACGCGAAUGCAUUUCGAGAGCGGCAUUAAUAAUGCAUUACUUUAAGCUGUGAUUAUUUAAUGGCGGCUUAAGGUCGGGAAAAUGUCA
...((((....)))).....(((((....)).(..(((.....((((.....))))....(((((((((((.(((....))).))))))))))))))..)....))). ( -30.30)
>DroAna_CAF1 4307 108 + 1
AAGUGGAGCCACUCAUUAUGGGCGCGUAGGCAUUUUAAAAGCCUUAUUAAUAAUGCAUUACUUUAAGCCGUGAUUAUUUAAUGGCAGCUUAAGGUCAGAAAAAUGUCA
.......(((.(.......)))).....((((((((....((.(((....))).))...(((((((((.((.(((....))).)).)))))))))....)))))))). ( -25.70)
>consensus
AACUGAGCACACUCAUUACAGACGCGAAUGCAUUUUAAAAGCGGUAUUAAUAAUGCAUUACUUUAAGCUGUGAUUAUUUAAUGGCGGCUUAAGGUCGGGAAAAUGUCA
...((((....)))).....((((..((((((((((((........)))).))))))))((((((((((((.(((....))).))))))))))))........)))). (-25.60 = -26.22 +   0.61)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:38:08 2006