Locus 712

Sequence ID 3R_DroMel_CAF1
Location 2,524,580 – 2,524,699
Length 119
Max. P 0.646760
window1127

overview

Window 7

Location 2,524,580 – 2,524,699
Length 119
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 96.98
Mean single sequence MFE -37.38
Consensus MFE -33.14
Energy contribution -33.22
Covariance contribution 0.08
Combinations/Pair 1.06
Mean z-score -1.33
Structure conservation index 0.89
SVM decision value 0.24
SVM RNA-class probability 0.646760
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 2524580 119 - 27905053
GGCAUUAUUCGAGUCGCCGGCUGGACAGUGGUUACUCCGCACUGUAAUCGACAUAAACUAUUUCCAGCUUAACCCUUGGUAAAGUGCGCUCGC-CGAUGAUUAGGCCAAACAAGUGCCAG
((((((....(((.(((((((((((..((((.....))))..(((.....))).........)))))))..(((...)))...).))))))((-(........)))......)))))).. ( -37.20)
>DroSec_CAF1 53960 119 - 1
GGCAUUAUUCGAGUCGCCGGCUGGACAGCGGUUACUCCGCACUGUAAUCGCCAUAAACUAUUUCCAGCUUAACCCUUGGCAAAGUGCGCUCGC-CGAUGAUUAGGCCAAACAAGUGCCAG
((((((....(((.(((.(((((((..((((((((........))))))))...........))))))).....(((....))).))))))((-(........)))......)))))).. ( -38.92)
>DroSim_CAF1 52888 119 - 1
GGCAUUAUUCGAGUCGCCGGCUGGACAGCGGUUACUCCGCACUGUAAUCGCCAUAAACUAUUUCCAGCUUAACCCUUGGCAAAGUGCGCUCGC-CGAUGAUUAGGCCAAACAAGUGCCAG
((((((....(((.(((.(((((((..((((((((........))))))))...........))))))).....(((....))).))))))((-(........)))......)))))).. ( -38.92)
>DroEre_CAF1 53707 119 - 1
GGCUUUAUUCGAGUCGCCGGCUGGACAGCGGUUACUCCGCACUGUAAUCGCCAUAAACUAUUUCCAGCUUAACCCUUGGCAAAGUGCGCUCGC-CAAUGAUUAGGCCAAACAAGUGCCAG
(((.......(((.(((.(((((((..((((((((........))))))))...........))))))).....(((....))).))))))((-(........))).........))).. ( -34.82)
>DroYak_CAF1 55235 120 - 1
GGCAUUAUUCGAGUCGCCAGCUGGACAGCGGUUACUCCGCUUUGUAAUCGCCAUAAACUAUUUCCAGCUUAACCCUUGGCAAAGUGCGCUCGCCCGAUGAUUAGGCCAAACAAGUGCCAG
((((((....(((.(((.(((((((..((((((((........))))))))...........))))))).....(((....))).))))))(((..(...)..)))......)))))).. ( -37.02)
>consensus
GGCAUUAUUCGAGUCGCCGGCUGGACAGCGGUUACUCCGCACUGUAAUCGCCAUAAACUAUUUCCAGCUUAACCCUUGGCAAAGUGCGCUCGC_CGAUGAUUAGGCCAAACAAGUGCCAG
((((((....(((.(((.(((((((..((((((((........))))))))...........))))))).....(((....))).))))))((.(........)))......)))))).. (-33.14 = -33.22 +   0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:00 2006