Locus 7096

Sequence ID 3R_DroMel_CAF1
Location 18,715,593 – 18,715,695
Length 102
Max. P 0.861938
window11477

overview

Window 7

Location 18,715,593 – 18,715,695
Length 102
Sequences 5
Columns 115
Reading direction reverse
Mean pairwise identity 78.36
Mean single sequence MFE -28.20
Consensus MFE -18.02
Energy contribution -18.86
Covariance contribution 0.84
Combinations/Pair 1.12
Mean z-score -1.92
Structure conservation index 0.64
SVM decision value 0.83
SVM RNA-class probability 0.861938
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 18715593 102 - 27905053
AGUCGCAGAACUGUAACUGUCGAAAUGUGGCAAGAAACCAACAGGACAAAUUGUGGUGGUAACAUAGCUACUUUUUGGAUAGUUAUUGGUGUUCAAAAUAUG-------------
.......((((.(((((((((.(((.(((((.....((((.((.((....)).)).))))......)))))..))).)))))))))....))))........------------- ( -28.00)
>DroSec_CAF1 149447 102 - 1
AGUCGGAGAGCUGAAACUGUCGAAAUGUGGCAAGAAACCAUCAGGACGAAUUGUGGUGGUAACAUAGCUACUUUUUGGAUAGUUAUUGGUGUUCAAAAUAUG-------------
.....(((.((..((((((((.(((.(((((.....(((((((.((....)).)))))))......)))))..))).))))))).)..)).)))........------------- ( -30.60)
>DroSim_CAF1 140991 102 - 1
AGUCGGAGAACUGAAACUGUCGAAAUGUGGCAAGAAACCAUCAGGACGAAUUGUGGUGGUAACAUAGCUACUUUUCGGAUAAUUAUUGGUGUUCAAAAUAUG-------------
.....(((.((..(.....((((((.(((((.....(((((((.((....)).)))))))......))))).)))))).......)..)).)))........------------- ( -25.40)
>DroEre_CAF1 147158 102 - 1
AGCCGGCGAGCUGAAACUGUCGAAAUGUGGCAAGAAACCAUCAGGCCGAACAGAGAUGGUAUCUUAGCUACUUUUUAGAUAGCUGUCAGAGUCCAAAUUGGG-------------
....(((...((((..(((((((((.(((((((((.((((((............)))))).)))).))))).)))).)))))...)))).))).........------------- ( -32.40)
>DroYak_CAF1 145369 111 - 1
AGUCGUAGAGCUGAAACUGUCGAAAUGUGGCAAGAAACCAUCAGGCGGCGCAGAGAUGAUAGCCUAGCUACUUUUUAGAUAGCUC----AUUUCCAAUUAGAAAGGUGCUUAGAU
.(((...(((((((..(((((((((.(((((..((.....))((((....((....))...)))).))))).)))).))))).))----)((((......))))...)))).))) ( -24.60)
>consensus
AGUCGGAGAGCUGAAACUGUCGAAAUGUGGCAAGAAACCAUCAGGACGAAUUGUGGUGGUAACAUAGCUACUUUUUGGAUAGUUAUUGGUGUUCAAAAUAUG_____________
.......((((...(((((((((((.(((((.....((((((............))))))......))))).)))).)))))))......))))..................... (-18.02 = -18.86 +   0.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:37:15 2006