Locus 709

Sequence ID 3R_DroMel_CAF1
Location 2,509,062 – 2,509,153
Length 91
Max. P 0.768270
window1122

overview

Window 2

Location 2,509,062 – 2,509,153
Length 91
Sequences 6
Columns 96
Reading direction reverse
Mean pairwise identity 79.56
Mean single sequence MFE -31.88
Consensus MFE -17.99
Energy contribution -18.72
Covariance contribution 0.73
Combinations/Pair 1.23
Mean z-score -2.06
Structure conservation index 0.56
SVM decision value 0.52
SVM RNA-class probability 0.768270
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 2509062 91 - 27905053
-----AUAGACUGUUGUAGCAGUAGGGGCUGUUCCAUGGAGAAGUCUGCUCCGAUUGGUUCGCUUCUGCUGCGAAGCGGAUAAUGAGAGUGUGCAG
-----.....(((((...(((((((((((.(..((((((((.......)))))..)))..))))))))))))..)))))................. ( -33.40)
>DroSec_CAF1 39141 91 - 1
-----AUAGACUGUUGUAGCAGUAGGGGCUGUUCCAUGGAGAAGUCUGCUCCGAUUGGUUCGCUUCUGCUGCGAAGCGGAUAAAGCGAGUGUGCAG
-----.....(((((...(((((((((((.(..((((((((.......)))))..)))..))))))))))))..))))).....(((....))).. ( -34.80)
>DroSim_CAF1 37707 91 - 1
-----AUAGACUGUUGUAGCAGUAGGGGCUGUUCCAUGGAGAAGUCUGCUCCGAUUGGUUCGCUUCUGCUGCGAAGCGGAUAAAGCGAGUGUGCAG
-----.....(((((...(((((((((((.(..((((((((.......)))))..)))..))))))))))))..))))).....(((....))).. ( -34.80)
>DroEre_CAF1 38707 93 - 1
UUUUGAUAGACUA-UGCAGCGGUAGGGGCUGUUCCAUGG--AAGUCUGCUCCGAUUGGUUCACUUCUGCUGCGAAGCGGAUAAAGAGAGUGCGCAG
.............-....((((((((((.((..((((((--(.(....)))))..)))..))))))))))))...(((.((.......)).))).. ( -27.80)
>DroYak_CAF1 39475 94 - 1
UUUUGAUAGACUGUUGGAGCAGUAGGGGCUGUUCCAUGG--AAGUCUGCUCCGAUUGGUUCGCUUCUGCUGCGAAUCGGAUAAAGAGAGUGCGCAG
......((((((..(((((((((....)))))))))...--.)))))).(((((((.((..((....)).)).)))))))................ ( -33.60)
>DroAna_CAF1 32930 87 - 1
------UGUAAUUUUAUUUAAACGGGGGCUGAACGGCCA--GAGUCUCCUCUGAUUGGCUCGUUUCCCCAGUGAA-CGGAUAAAGUGCGCGAAAAU
------.((.(((((((((..((.((((..(((((((((--..(((......))))))).))))))))).))...-.)))))))))..))...... ( -26.90)
>consensus
_____AUAGACUGUUGUAGCAGUAGGGGCUGUUCCAUGG__AAGUCUGCUCCGAUUGGUUCGCUUCUGCUGCGAAGCGGAUAAAGAGAGUGUGCAG
.......(((((..((.((((((....)))))).))......)))))((((......(((((((((......))))))))).....))))...... (-17.99 = -18.72 +   0.73)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:55 2006