Locus 7086

Sequence ID 3R_DroMel_CAF1
Location 18,696,785 – 18,696,903
Length 118
Max. P 0.844260
window11463

overview

Window 3

Location 18,696,785 – 18,696,903
Length 118
Sequences 5
Columns 118
Reading direction forward
Mean pairwise identity 94.06
Mean single sequence MFE -35.44
Consensus MFE -29.48
Energy contribution -29.64
Covariance contribution 0.16
Combinations/Pair 1.11
Mean z-score -1.61
Structure conservation index 0.83
SVM decision value 0.76
SVM RNA-class probability 0.844260
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 18696785 118 + 27905053
CCAAAUACUAUUUCUCCAAGUACGGCUUUCUGCUGCUGGCAGGAGGUUGGCCGUGCAAAAGACAAUAAGCGCAUAAAUUACGCCCGAAAUGUGCAGGGUGAAAGGUGAAAGGUGCCGA
.....((((.((((.((..((((((((.(((.(((....))).)))..))))))))........................(((((..........)))))...)).)))))))).... ( -37.00)
>DroSec_CAF1 127088 118 + 1
CCAAAUACUUUUUCUCCAAGUAAAGCUUUCUGCUGCUGGCAGGAGGUUGGCCGUGCAAAAGACAAUAAGCGCAUAAAUUACGCCCGAAAUGUGCAGGGUGAAAGGUGAAAGGUGCCGA
.....((((((((..........((((((((((.....)))))))))).(((((((............))))........(((((..........)))))...))))))))))).... ( -33.00)
>DroSim_CAF1 126081 118 + 1
CCAAAUACUUUUUCUCCAAGUAAGGCUUUCUGCUGCUGGCAGGAGGUUGGCCGUGCAAAAGACAAUAAGCGCAUAAAUUACGCCCGAAAUGUGCAGGGUGAAAGGUGAAAGGUGCCGA
.....((((((((..((..((((((((.(((.(((....))).)))..))))((((............)))).....))))((((..........))))....)).)))))))).... ( -33.10)
>DroEre_CAF1 130294 117 + 1
UAAAAUA-CUUUUCUCCAAGUAAGGCUUUCUGCUGCUGGCAGGAGGUUGGGCGUGCAAAAGACAAUAAGCGCAUAAAUUACGCCCGAAAUGUGCAGGGUGAAAGGUGAAAGGUGGCGA
.....((-((((((.((..((..((((((((((.....))))))))))..))((((............))))........(((((..........)))))...)).)))))))).... ( -39.10)
>DroYak_CAF1 128394 117 + 1
AAAAUAA-AUUUUCUCCAAGUACGGCUUUCUGCUGCUGGCAGGAGGUUGGCCACGCAAAAGACAAUAAGCGCAUAAAUUACGCCCGAAAUGUGCUGGGUGAAAGGUGAAAGGUGGCGA
.......-..............(((((((((((.....)))))))))))(((((((............)).(((...((.((((((........)))))).)).)))....))))).. ( -35.00)
>consensus
CCAAAUACUUUUUCUCCAAGUAAGGCUUUCUGCUGCUGGCAGGAGGUUGGCCGUGCAAAAGACAAUAAGCGCAUAAAUUACGCCCGAAAUGUGCAGGGUGAAAGGUGAAAGGUGCCGA
........((((((.((......((((((((((.....))))))))))....((((............))))........(((((..........)))))...)).))))))...... (-29.48 = -29.64 +   0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:37:02 2006