Locus 7074

Sequence ID 3R_DroMel_CAF1
Location 18,678,174 – 18,678,277
Length 103
Max. P 0.768964
window11448

overview

Window 8

Location 18,678,174 – 18,678,277
Length 103
Sequences 3
Columns 103
Reading direction reverse
Mean pairwise identity 89.00
Mean single sequence MFE -24.10
Consensus MFE -19.93
Energy contribution -20.27
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -2.24
Structure conservation index 0.83
SVM decision value 0.52
SVM RNA-class probability 0.768964
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 18678174 103 - 27905053
CACCAGCAAUCCAUGCCGGUAUUCAAACACAGAAUUGCCGGAAUCCCAAGAACCGGCCAAACACCCACAGAUGGCCCAUAAUGAUGGCCACCCGGUCAAAACA
...........(((.(((((((((.......))).)))))).............(((((............)))))....))).(((((....)))))..... ( -23.20)
>DroSec_CAF1 108146 94 - 1
---------UCCAACCCGGUAUUCAAACACAGAAUUGCCGGAAUCCCAAGACCCGUCCAAGCACCCACAGAUGGCCCAUAAUGAUGGCCGCCUGGUCAAAACA
---------......(((((((((.......))).))))))........(((..((....)).....(((.(((((.........))))).))))))...... ( -22.60)
>DroSim_CAF1 107067 103 - 1
AACCAGCAAUCCAGCCCGGUAUUCAAACACAGAAUUGCCGGAAUCCCAAGACCCGGCCAAACACCCACAGAUGGCCCAUAAUGAUGGCCGCCUGGUCAAAACA
.....((......))(((((((((.......))).))))))........((((.(((....(.......)..((((.........))))))).))))...... ( -26.50)
>consensus
_ACCAGCAAUCCAACCCGGUAUUCAAACACAGAAUUGCCGGAAUCCCAAGACCCGGCCAAACACCCACAGAUGGCCCAUAAUGAUGGCCGCCUGGUCAAAACA
...............(((((((((.......))).)))))).............(((((............)))))........(((((....)))))..... (-19.93 = -20.27 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:36:48 2006