Locus 7070

Sequence ID 3R_DroMel_CAF1
Location 18,676,025 – 18,676,129
Length 104
Max. P 0.987710
window11444

overview

Window 4

Location 18,676,025 – 18,676,129
Length 104
Sequences 4
Columns 104
Reading direction reverse
Mean pairwise identity 95.51
Mean single sequence MFE -31.43
Consensus MFE -29.77
Energy contribution -30.28
Covariance contribution 0.50
Combinations/Pair 1.00
Mean z-score -2.70
Structure conservation index 0.95
SVM decision value 2.09
SVM RNA-class probability 0.987710
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 18676025 104 - 27905053
AAAACAGAGAGGAGCUGGUGCCAAGCCAACUCUUCUCGAGGCUGGCCACAACGAAAGGAUAUUGCAAAUUUACCAAACAGCGGAAGCGGAAGUGCAAAACUAGC
......((((((((.((((.....)))).))))))))...(((((......(....)....(((((...((.((.....((....)))))).)))))..))))) ( -32.20)
>DroSec_CAF1 106006 104 - 1
AAAACCGAGAGGAGCUGGUGCCAAGCCAACUCUUCUCGAGGCUGGCCACAACGAAAGGAUAUUGCAAAUUUACCAAACAGCGGAAGCGGAAGUGCAAAACUAGC
.....(((((((((.((((.....)))).)))))))))..(((((......(....)....(((((...((.((.....((....)))))).)))))..))))) ( -34.10)
>DroSim_CAF1 104915 104 - 1
AAAACCGAGAGGAGCUGGUGCCAAGCCAACUCUUCUCGAGGCUGGCCACAACGAAAGGAUAUUGCAAAUUUACCAAACAGCGGAAGCGGAAGUGCAAAACUAGC
.....(((((((((.((((.....)))).)))))))))..(((((......(....)....(((((...((.((.....((....)))))).)))))..))))) ( -34.10)
>DroEre_CAF1 109165 103 - 1
AAA-AAGAGUGGAGAUGGUGCCAAGCCAACUCGUCUCGAGGCUGGCUACAACGCAAGGAUAUUGCAAAUUUACCAAACAACGGAAGCGGAAGUGCAAAACUAGC
...-..(((..(((.((((.....)))).)))..)))...(((((......(....)....((((.......((.......))..((....))))))..))))) ( -25.30)
>consensus
AAAACAGAGAGGAGCUGGUGCCAAGCCAACUCUUCUCGAGGCUGGCCACAACGAAAGGAUAUUGCAAAUUUACCAAACAGCGGAAGCGGAAGUGCAAAACUAGC
......((((((((.((((.....)))).))))))))...(((((......(....)....((((.......((.......))..((....))))))..))))) (-29.77 = -30.28 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:36:44 2006