Locus 707

Sequence ID 3R_DroMel_CAF1
Location 2,504,627 – 2,504,718
Length 91
Max. P 0.522673
window1120

overview

Window 0

Location 2,504,627 – 2,504,718
Length 91
Sequences 5
Columns 114
Reading direction reverse
Mean pairwise identity 77.03
Mean single sequence MFE -21.70
Consensus MFE -1.97
Energy contribution -2.65
Covariance contribution 0.68
Combinations/Pair 1.17
Mean z-score -1.38
Structure conservation index 0.09
SVM decision value -0.02
SVM RNA-class probability 0.522673
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 2504627 91 - 27905053
CAUUAAU-AAGGAUCAUUUUAGAGAUC----------------------UGAUCAUCCCCAGCCAGUUCCACACCAGCUCAUUGCAUAAUUUCAAGUUCCUUCAUAGAACUCCC
.......-..((((....((((....)----------------------)))..))))..................((.....)).........(((((.......)))))... (  -9.30)
>DroSec_CAF1 34340 102 - 1
CAUUAAUGAAGGAUCAUUUUAUAGAACUGGUCU-----------ACUACUGAUCAUCCCCAGCCAGUUCCACGCCAGCUCAUUGCAUAAUUUCAAGUCC-CUCAUAGAACUCCC
.....((((.((((.........((((((((..-----------.................)))))))).......((.....))..........))))-.))))......... ( -18.61)
>DroSim_CAF1 32775 113 - 1
CAUUAAUGAAGGAUCAUUUUAGAGAACUGGUCUUGGUUAUAUCAACUACUGAUCAUCCCCAGCCAGUUUCACGCCAGCUCAUUGCAUAAUUUCAAGUCC-CUCAUAGAACUCCC
.....((((.((((.......((((.(((((..(((..((((((.....)))).))..))))))))))))......((.....))..........))))-.))))......... ( -23.80)
>DroEre_CAF1 33557 113 - 1
CAGUAAUGAAGGACCAUUUGGGGGAACAGCUUUCGGGUAUAUCAACUUCCGAUCAUCCCCAGCCAGUUCCACACCAGCCCAUUGCGUAACUUCAAGUCC-CUCGUAGAACUCCC
.....((((.((((....(((.(((((.(((...(((...(((.......)))...))).)))..)))))...)))((.....))..........))))-.))))......... ( -27.30)
>DroYak_CAF1 33422 113 - 1
CAGUAGUAAAGGAUCAUUUGGGAGAACAGCUUUCGAUUCUAUCAACUGGUGAGCAUCCCCAGCCAGGUGCACACCAGUUCAUUGCAUAAUUUCAUUCCC-UUCAUAGAACUACC
..(((((..((((((....(..((.....))..)))))))...((((((((.(((((........))))).))))))))....................-........))))). ( -29.50)
>consensus
CAUUAAUGAAGGAUCAUUUUAGAGAACAGCUCU_G__U_UAUCAACUACUGAUCAUCCCCAGCCAGUUCCACACCAGCUCAUUGCAUAAUUUCAAGUCC_CUCAUAGAACUCCC
......((((((((((.................................)))))......................((.....))....))))).................... ( -1.97 =  -2.65 +   0.68)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:53 2006