| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 18,647,293 – 18,647,384 |
| Length | 91 |
| Max. P | 0.567796 |
| Location | 18,647,293 – 18,647,384 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 93 |
| Reading direction | reverse |
| Mean pairwise identity | 81.30 |
| Mean single sequence MFE | -13.67 |
| Consensus MFE | -12.72 |
| Energy contribution | -12.33 |
| Covariance contribution | -0.39 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.18 |
| Structure conservation index | 0.93 |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.567796 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 18647293 91 - 27905053 CACCACAGAAAUUGCGCUCAAUAUUAUAUUGAAACGUGCCAAAUUGAAUGCAAUCGGUGGCCAAAAACCA--AGCCCCCCACCCCCCAUACCG ..((((....((((((.(((((......(((........)))))))).))))))..))))..........--..................... ( -13.10) >DroSec_CAF1 76650 88 - 1 CACCACAGAAGUUGCGCUCAAUAUUAUAUUGAAACGUGCCAAAUUGAAUGCAAUCGGUGGCCAAAAACCA--AGCCCCCAU---CCAAUCCCC ..((((....((((((.(((((......(((........)))))))).))))))..))))..........--.........---......... ( -13.40) >DroSim_CAF1 73706 88 - 1 CACCACAGAAAUUGCGCUCAAUAUUAUAUUGAAACGUGCCAAAUUGAAUGCAAUCGGUGGCCAAAAACCA--AGCCCCCAU---CCAAUCCCC ..((((....((((((.(((((......(((........)))))))).))))))..))))..........--.........---......... ( -13.10) >DroEre_CAF1 74847 77 - 1 CACCACAGAAAUUGCGCUCAAUAUUAUAUUGAAACGUGCCAAAUUGAAUGCAAUCGGUGGCUAAAAACCC--AGCC------UCC-------- ..........((((((.(((((......(((........)))))))).)))))).((.((((........--))))------.))-------- ( -14.50) >DroYak_CAF1 76037 92 - 1 CACCACAGAAAUUGCGCUCAAUAUUAUAUUGAAACGUGCCAAAUUGAAUGCAAUCGGUGGCUAAAAAUCCCCAUCC-CAUACCCCCUAUACCC ..((((....((((((.(((((......(((........)))))))).))))))..))))................-................ ( -13.10) >DroAna_CAF1 72927 79 - 1 CACCGCACAAAAUGCGCUCAAUAUUAUAUUGAAACGUGCCAAAUUGAAUGCAUUCAAUGGCAAGCACCUC--CGC---CAU---C------CC ....(((.....)))((((((((...))))))....(((((..(((((....)))))))))).)).....--...---...---.------.. ( -14.80) >consensus CACCACAGAAAUUGCGCUCAAUAUUAUAUUGAAACGUGCCAAAUUGAAUGCAAUCGGUGGCCAAAAACCA__AGCC_CCAU___CC_AU_CCC ..((((....((((((.(((((......(((........)))))))).))))))..))))................................. (-12.72 = -12.33 + -0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:36:30 2006