| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 18,634,900 – 18,634,994 |
| Length | 94 |
| Max. P | 0.645406 |
| Location | 18,634,900 – 18,634,994 |
|---|---|
| Length | 94 |
| Sequences | 4 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 67.81 |
| Mean single sequence MFE | -21.23 |
| Consensus MFE | -10.25 |
| Energy contribution | -11.38 |
| Covariance contribution | 1.12 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.71 |
| Structure conservation index | 0.48 |
| SVM decision value | 0.23 |
| SVM RNA-class probability | 0.645406 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 18634900 94 - 27905053 GAGUUACGGAUGUGAGCUUACACAGAGAAAGAAUUCGGUAAAAGUGGGUUUUCUGUGGUUUUCUA-----------------UGACAGCACAGCUAAAUUAAAUAUUAUGA ..((((..((...((((...(((((((((...(((.......)))...)))))))))))))))..-----------------))))(((...)))................ ( -15.80) >DroSec_CAF1 64200 77 - 1 GAGUUACGGAUGUGGGCGUACACAGAGAAAGAUUUCGGUAGGAGUGGGUUUUCUGUGAA---AUA-----------------UGACAGCAU------AUCUAA-------- .......(((((((.((((((((((((((..(((((....)))))...)))))))))..---.))-----------------)).)..)))------))))..-------- ( -22.30) >DroSim_CAF1 60881 77 - 1 GAGUUACGGAUGUGGGCGUACACAGAGAAAGAUUUCGGUAGGAGUGGGUUUUCUGUGGA---AUA-----------------UGACAGCAU------AUCUAA-------- .......(((((((.((((((((((((((..(((((....)))))...)))))))))..---.))-----------------)).)..)))------))))..-------- ( -22.30) >DroEre_CAF1 62334 103 - 1 GCGUUACGGAUGUGGGCGUACACAGAGAAAAAUGCUGAG-AGAGUGGCAGUUCUUUGGA---AUAUUUAAAAUGGGUCUACAUGACAGCAUUUCUAAAUUAAAUGC----A ..(((....((((((((.((..(((((((...((((...-.....)))).)))))))..---..........)).))))))))))).((((((.......))))))----. ( -24.54) >consensus GAGUUACGGAUGUGGGCGUACACAGAGAAAGAUUUCGGUAAGAGUGGGUUUUCUGUGGA___AUA_________________UGACAGCAU______AUCAAA________ ..((((...(((....))).(((((((((..(((((....)))))...))))))))).........................))))......................... (-10.25 = -11.38 + 1.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:36:23 2006