| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 18,581,275 – 18,581,372 |
| Length | 97 |
| Max. P | 0.561063 |
| Location | 18,581,275 – 18,581,372 |
|---|---|
| Length | 97 |
| Sequences | 4 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 83.49 |
| Mean single sequence MFE | -24.00 |
| Consensus MFE | -14.06 |
| Energy contribution | -14.75 |
| Covariance contribution | 0.69 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.02 |
| Structure conservation index | 0.59 |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.561063 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 18581275 97 - 27905053 GGCCAAUAUUCAUAUCGCGUCCACCGCAUGGAACAACCCUCUUCCGCCAGCUGG----------CUCGAAAUGGCCUCUUGGAUUCCAAAUAUCCAAACUACAUCUU (((((...(((.....(((.....)))..((((........))))(((....))----------)..))).)))))..((((((.......)))))).......... ( -25.10) >DroSec_CAF1 6247 97 - 1 GGCCAAUAUUCAUAUCGCGUCAACCACAUGGAACAACCCUCUUCCGCCAGCUGG----------CUCGACCUGGCCUCUUGGAUUCCAAACAUCCAAACUACAUCUU (((((...........(.(((........((((........))))(((....))----------)..)))))))))..((((((.......)))))).......... ( -21.00) >DroEre_CAF1 6323 99 - 1 GGCCAAUAUUCAUAUCGCGUCCACCGCAUGGAACAACCCUCUUCCGCCAGCUGGUAGAUAUUGCCACGACAUGGCCUCUUGGAUUC--------GAAACUACAUCUU ..............(((.(((((......((((........))))((((.(((((((...)))))).)...))))....))))).)--------))........... ( -22.30) >DroYak_CAF1 6531 99 - 1 GGCCAAUAUUCAUAUCGCGUCCGCCGCAUGGAACAACCCUCUUCCGCCAGCUGGCAGAUAUGGCCACGACAUGGCCCCUUGGAUUC--------CAAGCUACAUCUU (((((....((((((((((.....)))..((((........))))(((....))).)))))))........))))).(((((...)--------))))......... ( -27.60) >consensus GGCCAAUAUUCAUAUCGCGUCCACCGCAUGGAACAACCCUCUUCCGCCAGCUGG__________CACGACAUGGCCUCUUGGAUUC________CAAACUACAUCUU (((((...........(((.....)))..((((........))))(((....)))................)))))............................... (-14.06 = -14.75 + 0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:36:07 2006