Locus 704

Sequence ID 3R_DroMel_CAF1
Location 2,502,831 – 2,502,922
Length 91
Max. P 0.845630
window1117

overview

Window 7

Location 2,502,831 – 2,502,922
Length 91
Sequences 6
Columns 105
Reading direction forward
Mean pairwise identity 73.02
Mean single sequence MFE -28.08
Consensus MFE -14.51
Energy contribution -14.73
Covariance contribution 0.22
Combinations/Pair 1.25
Mean z-score -1.81
Structure conservation index 0.52
SVM decision value 0.77
SVM RNA-class probability 0.845630
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 2502831 91 + 27905053
----------UUACUUUCUAGCUC----AACUUACCUUGAGGCUUUGGAACAUUCCUCUUGAGUUGCAUCCACUUGUAGGUGGGGAUGCUGCUGGAAUGAUUUGG
----------...(.(((((((..----((((((....((((...((...))..)))).))))))((((((.((.......)))))))).))))))).)...... ( -25.60)
>DroPse_CAF1 28308 95 + 1
----------CCAAUUCCUAUCACUAAAAACUCACCUUGUGGCUUGGGAACGUUCCGCUUGAGCUGCAUCCACUUGUAGGUGGGAAUGCUGCUCGAGUGAUUUGG
----------((((((((((((((..............))))..)))))).....(((((((((.(((((((((....)))))..)))).)))))))))..)))) ( -34.74)
>DroGri_CAF1 61508 101 + 1
AAACAAUAUCUUAGCUUAGGGGCA----AGCUUACCUUGUGGCUUGGGAACAUUCCGCUUAAGUUGCAUCCAUUUGUAUGUUGGAAUGUUGGGCGCGUGAUUUGG
...(((.(((...((((((.((((----(.((((....((((..((....))..)))).)))))))).((((.........)))).).))))))....)))))). ( -25.90)
>DroWil_CAF1 43593 82 + 1
----------UUGUGU-------------UCUUACCUUGUGGCUUGGGAACAUUCCGUUUGAGUUGCAUCCAUUUGUAUGUUGGGAUAUUGGGUGUAUGAUUUGG
----------..((((-------------(((((((....))..))))))))).....(..(((((((((((...((((......)))))))))))..))))..) ( -18.70)
>DroAna_CAF1 27975 89 + 1
----------UUAUUUGUUAAA------CACUCACCUUGUGGCUUGGGAACGUUCCUCUUGAGCUGCAUCCACUUGUAGGUGGGCAGGUUGCUAGUGUGAUUUGG
----------............------..(((((((((..(((..(((.......)))..)))..)).........)))))))(((((..(....)..))))). ( -28.80)
>DroPer_CAF1 28480 95 + 1
----------CCAAUUCCUAUCACUAAAAACUCACCUUGUGGCUUGGGAACGUUCCGCUUGAGCUGCAUCCACUUGUAGGUGGGAAUGCUGCUCGAGUGAUUUGG
----------((((((((((((((..............))))..)))))).....(((((((((.(((((((((....)))))..)))).)))))))))..)))) ( -34.74)
>consensus
__________UUAAUUCCUAGC_C____AACUCACCUUGUGGCUUGGGAACAUUCCGCUUGAGCUGCAUCCACUUGUAGGUGGGAAUGCUGCUCGAGUGAUUUGG
..............................(((((((((..(((((((.........)))))))..)).........)))))))..................... (-14.51 = -14.73 +   0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:50 2006