Locus 7036

Sequence ID 3R_DroMel_CAF1
Location 18,560,163 – 18,560,266
Length 103
Max. P 0.845609
window11397

overview

Window 7

Location 18,560,163 – 18,560,266
Length 103
Sequences 6
Columns 106
Reading direction reverse
Mean pairwise identity 77.60
Mean single sequence MFE -30.62
Consensus MFE -22.97
Energy contribution -21.42
Covariance contribution -1.55
Combinations/Pair 1.50
Mean z-score -1.33
Structure conservation index 0.75
SVM decision value 0.77
SVM RNA-class probability 0.845609
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 18560163 103 - 27905053
UUG--UAAUAUUCUUUCUUG-CUUUCAGUACUACUUAUUGUCCGAGGAGGAGUGCGAUGACGCCGAGGACGUUGAGGUGCCCAAGGCAUUGGGCGACGUUUUCGAG
...--....(((((((((((-....(((((.....)))))..)))))))))))(((....)))(((((((((((.((((((...))))))...))))))))))).. ( -36.80)
>DroSec_CAF1 4367 102 - 1
UUA--AACUACUCU-ACUUG-CUUUCAGUACUACUUAUUGUCCGAGGAGGAGUGCGAUGAUGCCGAGGACGUUGAGGUGCCCAAGGCAUUGGGCGACGUUUUCGAG
...--...((((((-.((((-....(((((.....)))))..))))..)))))).........(((((((((((.((((((...))))))...))))))))))).. ( -32.50)
>DroSim_CAF1 14525 102 - 1
UUG--UAAUAUUCU-ACUUG-CUUUCAGUACUACUUAUUGUCCGAGGAGGAAUGCGAUGAUGCCGAGGACGUUGAGGUGCCCAAGGCAUUGGGCGAUGUUUUCGAG
(..--(..((((((-.((((-....(((((.....)))))..))))..))))))..)..)...(((((((((((.((((((...))))))...))))))))))).. ( -29.40)
>DroWil_CAF1 7509 103 - 1
UU-UGCUUUAUUUC-CUUUU-UUUUUAGUAUUAUCUGCUCUCCGAGGAGGAAUGCGAUGAUGCCGAGGAUGUGGAAGUACCCAAAGCAUUGGGUGAUGUCUUUGAA
..-.....((((((-(....-((((..((((((((.((..(((.....)))..))))))))))..))))...)))))))..(((((((((....)))).))))).. ( -31.70)
>DroMoj_CAF1 9402 102 - 1
UUA--CAUCAUCUU-UAUUAUUAU-UAGUAUUAUCUGCUGUCUGAGGAGGAGUGCGAUGAUGCCGAGGACGUCGAGGUACCUAAGGCAUUGGGCGAUGUAUUCGAA
...--(((((((..-...((....-))(((((.(((.((.....)).))))))))))))))).((((.((((((.....(((((....))))))))))).)))).. ( -26.70)
>DroAna_CAF1 6210 91 - 1
-------------U-UUUUA-UUUCCAGUAUUAUUUGCUAUCCGAGGAGGAGUGUGACGAUGCCGAGGACGUUGAGGUGCCCAAGGCCUUGGGCGAUGUUUUCGAG
-------------.-.....-......(((((..(..(..(((.....)))..)..).)))))((((((((((.....((((((....)))))))))))))))).. ( -26.60)
>consensus
UU___CAAUAUUCU_UCUUG_CUUUCAGUACUACUUACUGUCCGAGGAGGAGUGCGAUGAUGCCGAGGACGUUGAGGUGCCCAAGGCAUUGGGCGAUGUUUUCGAG
...........................(((((.(((.((.....)).))))))))........((((((((((.....((((((....)))))))))))))))).. (-22.97 = -21.42 +  -1.55)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:36:00 2006