Locus 7034

Sequence ID 3R_DroMel_CAF1
Location 18,549,466 – 18,549,558
Length 92
Max. P 0.598527
window11395

overview

Window 5

Location 18,549,466 – 18,549,558
Length 92
Sequences 6
Columns 92
Reading direction reverse
Mean pairwise identity 83.91
Mean single sequence MFE -36.98
Consensus MFE -27.97
Energy contribution -26.50
Covariance contribution -1.47
Combinations/Pair 1.30
Mean z-score -1.79
Structure conservation index 0.76
SVM decision value 0.13
SVM RNA-class probability 0.598527
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 18549466 92 - 27905053
AUGGGGAGCUCGCGCUUUUGACAAUAUGCUAAUUGUGCCACCCGGCUCUGGCAUUGUGCACCAGGUUAACCUGGAGUAUCUGGCCCGAGUGG
.((((((((....))))...(((((......)))))....))))((((.(((...((((.(((((....))))).))))...))).)))).. ( -34.30)
>DroPse_CAF1 2314 92 - 1
GUGGGGCGCCCGGGCGUUCAACAACAUGCUGAUUGUGCCCCCGGGCUCCGGCAUUGUGCAUCAGGUAAACUUGGAGUACUUGGCCCGCGUUG
(((.((.(((((((.((.(((((......)).))).)).))))))).))(((...((((..((((....))))..))))...)))))).... ( -41.00)
>DroSec_CAF1 2310 92 - 1
AUGGGGAGCCCGCGCUUUUGACAAUAUGCUAAUUGUGCCACCCGGCUCUGGCAUUGUGCACCAGGUUAACCUGGAGUACCUGGCCCGAGUGG
.((((((((....))))...(((((......)))))....))))((((.(((...((((.(((((....))))).))))...))).)))).. ( -35.30)
>DroAna_CAF1 2679 92 - 1
GUGGGGGGCCAAAGCCUUCGACAAUAUGCUGAUUGUGCCGCCUGGGUCCGGCAUAGUGCAUCAGGUUAACCUGGAAUACUUGGCGCGUGUAG
((.((((((....)))))).)).(((((((((((((((((........))))))))).))(((((....)))))..........)))))).. ( -34.60)
>DroPer_CAF1 2314 92 - 1
GUGGGGCGCCCGGGCGUUCAACAACAUGCUGAUUGUGCCCCCGGGCUCCGGCAUUGUGCAUCAGGUGAACUUGGAGUACUUGGCCCGCGUUG
(((.((.(((((((.((.(((((......)).))).)).))))))).))(((...((((..((((....))))..))))...)))))).... ( -42.50)
>DroEre_CAF1 2317 92 - 1
AUGGGGAGCACGCGCUUUUGACAAUAUGCUAAUUGUGCCACCCGGUUCUGGUAUUGUGCACCAGGUUAACCUGGAGUACCUUGCCCGAGUGG
.((((..(((((.((............))....)))))..)))).(((.((((..((((.(((((....))))).))))..)))).)))... ( -34.20)
>consensus
AUGGGGAGCCCGCGCUUUCGACAAUAUGCUAAUUGUGCCACCCGGCUCCGGCAUUGUGCACCAGGUUAACCUGGAGUACCUGGCCCGAGUGG
.((((((((....))))........((((((...(.(((....))).))))))).((((.(((((....))))).))))....))))..... (-27.97 = -26.50 +  -1.47)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:35:58 2006