| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 18,528,211 – 18,528,312 |
| Length | 101 |
| Max. P | 0.950641 |
| Location | 18,528,211 – 18,528,312 |
|---|---|
| Length | 101 |
| Sequences | 4 |
| Columns | 102 |
| Reading direction | forward |
| Mean pairwise identity | 92.87 |
| Mean single sequence MFE | -20.08 |
| Consensus MFE | -16.60 |
| Energy contribution | -19.60 |
| Covariance contribution | 3.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.72 |
| Structure conservation index | 0.83 |
| SVM decision value | 1.40 |
| SVM RNA-class probability | 0.950641 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 18528211 101 + 27905053 CGGCUAUUUUGAGUUUUCCUCAGUUUUACUGUCACACUUCGGUUUGACAACUUUUCCCCUACCCAAUGGUGU-CGCCGGCAACCGCUUUUCUUUUUUUUCCU ((((....(((((.....)))))......(((((.((....)).)))))..........((((....)))).-.))))((....))................ ( -21.10) >DroSim_CAF1 606 99 + 1 CGGCUAUUUUGAGUUUUCCUCAGUUUUACUGUCACACUUCGGUUUGACAACUUUUCCCCUACCCAAUUGUGU-CGCCGGCAACCGCUUUUCCUU--UUCCCA ((((....(((((.....)))))......(((((.((....)).))))).......................-.))))((....))........--...... ( -19.60) >DroEre_CAF1 544 97 + 1 CGGCUAUUUUGAGUUUUCCUCAGUUUUACUGUCACACUUCGGUUUGACAACUUUUCCUCUACC-A-UUGCGUCCGCCGGCAACCGCUUUUCCUU--UU-CCC ((((....(((((.....)))))......(((((.((....)).)))))..............-.-........))))((....))........--..-... ( -19.60) >DroYak_CAF1 609 98 + 1 CGGCUAUUUUGAGUUUUCCUCAGUUUUACUGUCACACUUCGGUUUGACAACUUUUCCUCUACC-AAUUGUGCCCGCCGGCAACCGCUUUUCCUU--UU-CCC .(((....(((((.....)))))......(((((.((....)).)))))..............-......))).((.(....).))........--..-... ( -20.00) >consensus CGGCUAUUUUGAGUUUUCCUCAGUUUUACUGUCACACUUCGGUUUGACAACUUUUCCCCUACC_AAUUGUGU_CGCCGGCAACCGCUUUUCCUU__UU_CCC ((((....(((((.....)))))......(((((.((....)).))))).........................))))((....))................ (-16.60 = -19.60 + 3.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:35:45 2006