Locus 7020

Sequence ID 3R_DroMel_CAF1
Location 18,493,561 – 18,493,652
Length 91
Max. P 0.780042
window11375

overview

Window 5

Location 18,493,561 – 18,493,652
Length 91
Sequences 5
Columns 91
Reading direction reverse
Mean pairwise identity 91.43
Mean single sequence MFE -28.37
Consensus MFE -24.00
Energy contribution -23.44
Covariance contribution -0.56
Combinations/Pair 1.14
Mean z-score -1.46
Structure conservation index 0.85
SVM decision value 0.55
SVM RNA-class probability 0.780042
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 18493561 91 - 27905053
GCAAAAAGCUUUUUACAGUUGCAGUUCCUUGUGGCUGUGUGUGAGCGAGCGAGCGAGAAGCUUACACAGAGAGAAAAUCAUUCGGCGUCUG
((......(((((((((((..(((....)))..)))))((((((((...(......)..))))))))))))))...........))..... ( -26.83)
>DroSec_CAF1 15089 91 - 1
GCAAAAAGCUUUUUACAGUUGCAGUUCCUUGUGGCUGUGUGUGCGCGAGCGAGAGAGGAGCUCACACAGAGAGAAACCCAAUCGGUUUCUG
........((((..(((((..(((....)))..)))))(((((.((...(....)....)).)))))))))(((((((.....))))))). ( -30.70)
>DroSim_CAF1 14009 91 - 1
GCAAAAAGCUUUUUGCAGUUGCAGUUCCUUGUGGCUGUGUGUGCGCGAGCGAGAGAGGAGCUUACACAGAGAGAAAACCAUUCGGUUUCUG
.....((((((((((((((..(((....)))..)))))...(((....)))...)))))))))........(((((.((....))))))). ( -28.40)
>DroEre_CAF1 15163 91 - 1
GCAAAAAGCUUUUUACAGUUGCAGUUCCUUGUGGCUGUGUGUGUGCGAGCGACAGAGGAGCUCACACGGAGAGAAAACCUGUCGGUUUUAG
........(((((((((((..(((....)))..))))))..((((.((((..(...)..)))).)))))))))((((((....)))))).. ( -28.60)
>DroYak_CAF1 16426 91 - 1
GCAAAAAGCUUUUUACAGUUGCAGUUCCUUGUGGCUGUGUGUGUGCGAGCGAGAGAGGAGCUUACACAGAGAGAAAACCUUUCGGGUUUAG
........(((((((((((..(((....)))..)))))(((((.((...(....)....)).))))))))))).(((((.....))))).. ( -27.30)
>consensus
GCAAAAAGCUUUUUACAGUUGCAGUUCCUUGUGGCUGUGUGUGCGCGAGCGAGAGAGGAGCUUACACAGAGAGAAAACCAUUCGGUUUCUG
........(((((((((((..(((....)))..)))))(((((.((...(....)....)).))))))))))).................. (-24.00 = -23.44 +  -0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:35:38 2006