Locus 701

Sequence ID 3R_DroMel_CAF1
Location 2,496,824 – 2,496,918
Length 94
Max. P 0.514494
window1114

overview

Window 4

Location 2,496,824 – 2,496,918
Length 94
Sequences 6
Columns 107
Reading direction reverse
Mean pairwise identity 75.31
Mean single sequence MFE -27.37
Consensus MFE -13.56
Energy contribution -13.87
Covariance contribution 0.31
Combinations/Pair 1.10
Mean z-score -1.70
Structure conservation index 0.50
SVM decision value -0.04
SVM RNA-class probability 0.514494
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 2496824 94 - 27905053
UGCC-CGAGCGGACAUUUGGUGCAAAC-----AGUGCGCCAAAA-------GCGGAGGAUACGGAUAUCUUAUCUGCUGUUUGCAUUCGCUUGGCGUUGGCCCAAGG
.(((-((((((((..(((((((((...-----..)))))))))(-------((((((((((....)))))..)))))).......))))))))).)).......... ( -35.60)
>DroVir_CAF1 59846 77 - 1
UGCC-UUUUUGGACAUUUCGUGCAAAC-----AGUGCGCCAAGC-------GAGGA------GGAUAUCUUAUCUUUUGUUUGCAUUCG-----------CAUAAGG
..((-((..((((......((((((((-----..(((.....))-------).(((------(((((...)))))))))))))))))).-----------)).)))) ( -18.00)
>DroPse_CAF1 22876 96 - 1
UGCCUUGAAUGGACAUUUGGUGCAAACAGAACAGUGCGCCAAAAGCCAAACGCGGAGGAUACGGAUAUCUUAUCUGGUGUUUGCAUUCG-----------UCCAAGG
..(((((.(((((..(((((((((..........))))))))).((.((((((...(((((.((....))))))).)))))))).))))-----------).))))) ( -31.30)
>DroGri_CAF1 56696 73 - 1
UGCC-UU-UUGGACAUUUCGUGCAAAC-----AUUGCGCCAAAC-------G---A------GGAUAUCUUAUCUUUUGUUUGCAUUCG-----------CAUAAGG
..((-((-.((((......(((((...-----..)))))(((((-------(---(------(((((...)))).))))))))...)).-----------)).)))) ( -16.80)
>DroAna_CAF1 22902 89 - 1
UGCCUUGAACGGACAUUUGGUGCAAAC-----AGUGCGCCAAAA-------GCGGAGGAUACGGAUAUCUUAUCUGCUGUUUGCAUUCGG------UUGGCCCAAGG
..(((((..(((((.(((((((((...-----..)))))))))(-------((((((((((....)))))..))))))))))).....((------....))))))) ( -31.20)
>DroPer_CAF1 22990 96 - 1
UGCCUUGAAUGGACAUUUGGUGCAAACAGAACAGUGCGCCAAAAGCCAAACGCGGAGGAUACGGAUAUCUUAUCUGGUGUUUGCAUUCG-----------UCCAAGG
..(((((.(((((..(((((((((..........))))))))).((.((((((...(((((.((....))))))).)))))))).))))-----------).))))) ( -31.30)
>consensus
UGCC_UGAAUGGACAUUUGGUGCAAAC_____AGUGCGCCAAAA_______GCGGAGGAUACGGAUAUCUUAUCUGCUGUUUGCAUUCG___________CCCAAGG
.........(((((((((((((((..........)))))))))..................((((((...)))))).))))))........................ (-13.56 = -13.87 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:46 2006