Locus 7008

Sequence ID 3R_DroMel_CAF1
Location 18,474,242 – 18,474,343
Length 101
Max. P 0.916830
window11360

overview

Window 0

Location 18,474,242 – 18,474,343
Length 101
Sequences 5
Columns 109
Reading direction forward
Mean pairwise identity 78.18
Mean single sequence MFE -23.26
Consensus MFE -14.87
Energy contribution -17.27
Covariance contribution 2.40
Combinations/Pair 1.12
Mean z-score -2.03
Structure conservation index 0.64
SVM decision value 1.11
SVM RNA-class probability 0.916830
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 18474242 101 + 27905053
--------GUCAGCUUAUAACUAAAACCAUUUUGGUUGUUCCAGACAAAUUAGGGUGCGAAUUACACAAACGCCUAUCCAAUUCCAAUGUCCUGGCUGGCACACACACA
--------((((((..(((((((((.....)))))))))..((((((((((.(((((((...........)))..))))))))....))).)))))))))......... ( -23.30)
>DroSec_CAF1 29428 101 + 1
--------GCCAGCUUAUAACCAAAACCAUUUUGGCUGUUUCAGACAAAUUAGGGUGGGAAUUACACAAACGCCUAUCCAAUUCCAACGUCCUGGCUGGCUCACACACA
--------((((((..(((.(((((.....))))).)))..(((((.((((.(((((((..((.....))..))))))))))).....)).)))))))))......... ( -25.90)
>DroSim_CAF1 29106 101 + 1
--------GUCAGCUUAUAACCAAAACCAUUUUGGUUGUUUCAGACAAAUUAGGGUGGGAAUUACACAAACGCCUAUCCAAUUCCAACGUCCUGGCUGGCACACACACA
--------((((((..(((((((((.....)))))))))..(((((.((((.(((((((..((.....))..))))))))))).....)).)))))))))......... ( -27.90)
>DroEre_CAF1 29655 97 + 1
----UCAAGUCCGCUCAUAGCCAAAACCAUUUUGGUUGUUCCAGACAAAUUAGGG--GGUAUUACACAAACGCCCAACCAAUUCCAAAGUCCUGGCA------GACGCA
----....(((.((..(((((((((.....)))))))))..(((((.((((.(((--((..((.....))..)))..)))))).....)).))))).------)))... ( -20.70)
>DroYak_CAF1 30521 91 + 1
AAGCUUAAGUCAGCUUAUAACCAAAACCAUUUUGCUUGUUCCACGCAAAUUAGGGAAGGAAUUACACA------------------AUGUCCUGGCUGGCACACACACA
........(((((((...........((..(((((.((...)).)))))....)).(((((((....)------------------)).)))))))))))......... ( -18.50)
>consensus
________GUCAGCUUAUAACCAAAACCAUUUUGGUUGUUCCAGACAAAUUAGGGUGGGAAUUACACAAACGCCUAUCCAAUUCCAACGUCCUGGCUGGCACACACACA
........((((((..(((((((((.....)))))))))...........(((((..((((((................))))))....)))))))))))......... (-14.87 = -17.27 +   2.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:35:24 2006