| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 18,472,920 – 18,473,040 |
| Length | 120 |
| Max. P | 0.938546 |
| Location | 18,472,920 – 18,473,040 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 91.85 |
| Mean single sequence MFE | -33.39 |
| Consensus MFE | -30.78 |
| Energy contribution | -30.79 |
| Covariance contribution | 0.01 |
| Combinations/Pair | 1.11 |
| Mean z-score | -2.36 |
| Structure conservation index | 0.92 |
| SVM decision value | 1.27 |
| SVM RNA-class probability | 0.938546 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 18472920 120 + 27905053 UUUUUUGGUUAUUGUUGCUCAUCGUUGGUUGGCUUCUUUGUUGGCUUGUUUGUUUUUCGCCAGCUGCAUGCAGCCAGCCAUGAAAUCUGUGCAACCUUUGCCCCACCAUCCAACAUCCAC ......(((....(((((.((((((.((((((((.(...((((((.............)))))).....).))))))))))))....)).)))))....))).................. ( -35.02) >DroSec_CAF1 28141 116 + 1 ---UUUUGUUAUUGUUGCUCAGCGUUGGUUGGCUUCUUUGUUGGCUUGUUUGUUUUUCGCUAGCUGCAUGCAGCCAGCCAUGAAAUCUGUGCAACCUUUGGCACAACAUCCACCCACC-C ---...(((((..(((((.(((...(((((((((.(...((((((.............)))))).....).)))))))))......))).)))))...)))))...............-. ( -33.82) >DroSim_CAF1 27849 116 + 1 ---UUUUGUUAUUGUUGCUCGACGUUGGUUGGCUUCUUUGUUGGCUUGUUUGUUUUUCGCCAGCUGCAUGCAGCCAGCCAUGAAAUCUGUGCAACCUUUGGCCCAACAUCCACCCACC-C ---....((((..(((((.(((...(((((((((.(...((((((.............)))))).....).))))))))).....)).).)))))...))))................-. ( -31.32) >consensus ___UUUUGUUAUUGUUGCUCAACGUUGGUUGGCUUCUUUGUUGGCUUGUUUGUUUUUCGCCAGCUGCAUGCAGCCAGCCAUGAAAUCUGUGCAACCUUUGGCCCAACAUCCACCCACC_C ......(((((..(((((.((....(((((((((.(...((((((.............)))))).....).))))))))).......)).)))))...)))))................. (-30.78 = -30.79 + 0.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:35:19 2006