Locus 700

Sequence ID 3R_DroMel_CAF1
Location 2,495,424 – 2,495,519
Length 95
Max. P 0.870587
window1113

overview

Window 3

Location 2,495,424 – 2,495,519
Length 95
Sequences 6
Columns 95
Reading direction reverse
Mean pairwise identity 87.65
Mean single sequence MFE -29.97
Consensus MFE -25.63
Energy contribution -26.22
Covariance contribution 0.59
Combinations/Pair 1.14
Mean z-score -2.10
Structure conservation index 0.86
SVM decision value 0.87
SVM RNA-class probability 0.870587
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 2495424 95 - 27905053
UCCUAUCUAUCUUUAGGCCCGGCCACUAGGGACAGAAGGGUGGUAUCAGGGUAUUAACUGUACGACCCCAUACGGGCUUAGUUUAGAUUGAAAAG
((..(((((...(((((((((.((....)).......((((.(((.(((........)))))).))))....)))))))))..))))).)).... ( -33.80)
>DroSec_CAF1 25214 95 - 1
UCCUAUCUAUCUUUAGGCCCGGGCACUAGGGAUAGAAGGGUGGUAUCAGGGUAUUAACUGUACGACCCCAUACGGGCUUAGUUUAGAUUGAAAAG
((..(((((...(((((((((....(((....)))..((((.(((.(((........)))))).))))....)))))))))..))))).)).... ( -33.60)
>DroSim_CAF1 22853 95 - 1
UCCUAUCUAUCUUUAGGCCCGGCCACUAGGGACAGAAGGGUGGUAUCAGGGUAUUAACUGUACGACCCCAUACGGGCUUAGUUUAGAUUGAAAAG
((..(((((...(((((((((.((....)).......((((.(((.(((........)))))).))))....)))))))))..))))).)).... ( -33.80)
>DroEre_CAF1 24081 95 - 1
UCCUAUCUAGCUUUAGGCCCGGCCACCGGGGACAGAAGGGUGGUAUCAGGGCAUUAACUGUACGACCCCAUUCGGGCUUAGUUUAGAUUGAAAAG
((..((((((..((((((((((.....(....)....((((.(((.(((........)))))).))))...)))))))))).)))))).)).... ( -34.90)
>DroYak_CAF1 23934 95 - 1
UCCUAUCUAGCUUUAGGCUCGGCCACUAGGGACAGAAGGCUGGUAUCAGGGUAUUAACUGUACGACCCCAUACGGGCUUAGUUUAGAUUGAAAAG
((..((((((..(((((((((.......(((.(((....)))(((.(((........))))))..)))....))))))))).)))))).)).... ( -26.20)
>DroAna_CAF1 21380 80 - 1
UCCUAUCUAUCUUUACGC---------------AAAAGGGUGGUAUUAAGGCAUUUAUUGUAGUGCCCCAUAGGGGCUUAGUUUAGAUUGAAGAG
((((((((((((((....---------------..))))))))......((((((......))))))..)))))).................... ( -17.50)
>consensus
UCCUAUCUAUCUUUAGGCCCGGCCACUAGGGACAGAAGGGUGGUAUCAGGGUAUUAACUGUACGACCCCAUACGGGCUUAGUUUAGAUUGAAAAG
((..(((((...(((((((((.((....)).......((((.(((.(((........)))))).))))....)))))))))..))))).)).... (-25.63 = -26.22 +   0.59)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:45 2006