| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 475,576 – 475,666 |
| Length | 90 |
| Max. P | 0.931062 |
| Location | 475,576 – 475,666 |
|---|---|
| Length | 90 |
| Sequences | 4 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 80.00 |
| Mean single sequence MFE | -25.32 |
| Consensus MFE | -19.98 |
| Energy contribution | -20.11 |
| Covariance contribution | 0.13 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.97 |
| Structure conservation index | 0.79 |
| SVM decision value | 1.21 |
| SVM RNA-class probability | 0.931062 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 475576 90 - 27905053 UUUGUUCGUGUGUAUACAUACAUAUGUGCCGGGAGAAGAUCUUAUUGAUGGCAG------------UCCGCCGUAUAUUUU-UGCUCAUGUGCAACCCAUU--GC ...((.((((((((....)))))))).)).(((..............(((((..------------...)))))......(-(((......)))))))...--.. ( -22.50) >DroSec_CAF1 3445 90 - 1 UUUGCACAUGUAUAUACAUAUAUAUGUGCCGGGAAAAGAUCUUACAGAUGGCAG------------UCCGCCGUAUAUUUU-UGCUCAUCUGCAACCCAUU--GC ...(((((((((((....))))))))))).(((..............(((((..------------...)))))......(-(((......)))))))...--.. ( -27.30) >DroSim_CAF1 3410 90 - 1 UUUGCACAUGUGUAUACAUAUAUAUGUGCCGGGAAAAGAUCUUAUAGAUGGCAG------------UCCGCCGUAUAUUUU-UGCUCAUCUGCAACCCAUU--GC ...(((((((((((....))))))))))).(((..............(((((..------------...)))))......(-(((......)))))))...--.. ( -27.30) >DroEre_CAF1 4975 100 - 1 UA----CGUAUGUACA-AUGUGCAUGUGCCGGGAGAAGAUCUUAUAGAUGGCAGCUGCUCCGCCAGUCCGCCGUAUAUUUCAUGCUCAUCUGCAACCCACAAAUC ..----(((((((((.-..)))))))))..(((....((....(((.(((((.((((......))))..))))).))).)).(((......))).)))....... ( -24.20) >consensus UUUGCACAUGUGUAUACAUAUAUAUGUGCCGGGAAAAGAUCUUAUAGAUGGCAG____________UCCGCCGUAUAUUUU_UGCUCAUCUGCAACCCAUU__GC ...(((((((((((....))))))))))).(((..............(((((.................)))))........(((......))).)))....... (-19.98 = -20.11 + 0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:12 2006