Locus 699

Sequence ID 3R_DroMel_CAF1
Location 2,493,184 – 2,493,287
Length 103
Max. P 0.993571
window1112

overview

Window 2

Location 2,493,184 – 2,493,287
Length 103
Sequences 6
Columns 104
Reading direction forward
Mean pairwise identity 93.03
Mean single sequence MFE -24.42
Consensus MFE -20.93
Energy contribution -21.27
Covariance contribution 0.33
Combinations/Pair 1.10
Mean z-score -3.00
Structure conservation index 0.86
SVM decision value 2.41
SVM RNA-class probability 0.993571
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 2493184 103 + 27905053
UUUGUGUUAUCUUAAUAGCAACGUUUUGGCUACUGUUU-UCUGUUUGUUCUACUUGUGUUUUCCAUUCUAUAGAUUACGCUGAAUUCCGGUAGCCAUCCGAUAG
....((((((....)))))).((...(((((((((..(-((.((.((.((((...(((.....)))....)))).)).)).)))...)))))))))..)).... ( -24.30)
>DroSec_CAF1 23042 103 + 1
UUUGUGUUAUCUUAAUAGCAACGUUUUGGCUACUGUUU-UCUGUUUAUUCUACUUGUGUUUUCCAUUCUAUAGAUUACGCUGAAUUCCGGUAGCCAUCCGAUAG
....((((((....)))))).((...(((((((((..(-((.((.((.((((...(((.....)))....)))).)).)).)))...)))))))))..)).... ( -25.10)
>DroSim_CAF1 20672 103 + 1
UUUGUGUUAUCUUAAUAGCAACGUUUUGGCUACUGUUU-UCUGUUUAUUCUACUUGUGUUUUCCAUUCUAUAGAUUACGCUGAAUUCCGGUAGCCAUCCGAUAG
....((((((....)))))).((...(((((((((..(-((.((.((.((((...(((.....)))....)))).)).)).)))...)))))))))..)).... ( -25.10)
>DroEre_CAF1 21934 102 + 1
UUUGUGUUAUCUUAAUAGCAACGUUUUGGCUACUGGUU-UCUGUUUAUUCUACUUGUGUU-UCCAUUCUAUAGAUUACGCUGAAUUCCGGUAGCCAUCUGAUAG
....((((((....))))))..(((.((((((((((.(-((.((.((.((((...(((..-..)))....)))).)).)).)))..))))))))))...))).. ( -27.50)
>DroYak_CAF1 21673 103 + 1
UUUGUGUUAUCUUAAUAGCAACGUUUUGGCUACUGUUU-UCUGUUUAUUCUACUUGUGUUUUCCAUUCCAUAGAUUACGCUGAAUUCCGGUAGCCAUCUGAUAG
....((((((....))))))..(((.(((((((((..(-((.((.((.((((...(((.....)))....)))).)).)).)))...)))))))))...))).. ( -23.90)
>DroAna_CAF1 19394 97 + 1
UUUGUGUUAUCUUAAUAGCAACGUUUUGGCUACUGUUUUUGUGUUUAUUUUAU-------UUCUAUUUUUUAGAUUACGCUGAAUUCCGGUAGCCUUCCGAUAA
....((((((....)))))).((....((((((((.(((.((((.........-------.((((.....))))..)))).)))...))))))))...)).... ( -20.60)
>consensus
UUUGUGUUAUCUUAAUAGCAACGUUUUGGCUACUGUUU_UCUGUUUAUUCUACUUGUGUUUUCCAUUCUAUAGAUUACGCUGAAUUCCGGUAGCCAUCCGAUAG
....((((((....)))))).((...(((((((((....((.((.((.((((...(((.....)))....)))).)).)).))....)))))))))..)).... (-20.93 = -21.27 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:44 2006