Locus 6983

Sequence ID 3R_DroMel_CAF1
Location 18,418,908 – 18,419,017
Length 109
Max. P 0.952820
window11322

overview

Window 2

Location 18,418,908 – 18,419,017
Length 109
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 77.76
Mean single sequence MFE -31.40
Consensus MFE -18.99
Energy contribution -19.38
Covariance contribution 0.39
Combinations/Pair 1.11
Mean z-score -2.26
Structure conservation index 0.60
SVM decision value 1.43
SVM RNA-class probability 0.952820
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 18418908 109 + 27905053
GCUCCGUCGCUGCGGUUCGUUGCACGCCACGGCACAGCGAGCAGC--AGUGGCAGUGGCUA---AAACAGUCAAAGAAAUAAUAA----GAACAAUAAGUGCAUAAGGCACUCAGCU--A
(((..((((((((.((((((((...((....)).)))))))).))--))))))..(((((.---....)))))............----........(((((.....))))).))).--. ( -38.70)
>DroVir_CAF1 4523 110 + 1
GC----ACGCUGCGGUUCGUUGCACGCCACGGCACAGCGAACAGCGCAACAACAAUAACAA---CAAGCAUUUACGAAAUAAUAAGUUAGAACAAUGAGUGCAUAAGGCACAG-GCA--C
((----..(((((.((((((((...((....)).)))))))).))................---...(((((((.....(((....)))......)))))))....)))....-)).--. ( -25.90)
>DroPse_CAF1 4858 112 + 1
GCUCCAACGCUGCGGUUCGUUGCACGCCACGGCACAGCGAGCAGC--AU--ACAGCCACUACAACAACAAUCAAAGAAAUAAUAA----GAACAAUAAGUGCAUAAGGCACUCAGUGGCU
........(((((...((((((...((....)).)))))))))))--..--..(((((((..............(....).....----........(((((.....))))).))))))) ( -31.70)
>DroEre_CAF1 4981 108 + 1
GCUCCGCCGCUGCGGUUCGUUGCACGCCACGGCACAGCGAACAGC--AGUAGCAGUGGCUA---AAACAGUCAAAGAAAUAAUAA----GAACAAUAAGUGCAUA-GGCACUCAGCU--A
(((..((..((((.((((((((...((....)).)))))))).))--))..))..(((((.---....)))))............----........(((((...-.))))).))).--. ( -36.10)
>DroAna_CAF1 4291 96 + 1
UCUCCAUCGCUGCGGUUCGUUGCACGCCACGGCACAGCGAGCAG-------GCACCGGC----------ACCGAAGAAAUAAUAA----GAACAAUAAGUGCAAGAGCCACUCUACA---
.............(((((.(((((((((...((.......)).)-------))..((..----------..))............----.........)))))))))))........--- ( -24.30)
>DroPer_CAF1 5701 112 + 1
GCUCCAACGCUGCGGUUCGUUGCACGCCACGGCACAGCGAGCAGC--AU--ACAGCCACUACAACAACAAUCAAAGAAAUAAUAA----GAACAAUAAGUGCAUAAGGCACUCAGUGGCU
........(((((...((((((...((....)).)))))))))))--..--..(((((((..............(....).....----........(((((.....))))).))))))) ( -31.70)
>consensus
GCUCCAACGCUGCGGUUCGUUGCACGCCACGGCACAGCGAGCAGC__AG__ACAGCGACUA___CAACAAUCAAAGAAAUAAUAA____GAACAAUAAGUGCAUAAGGCACUCAGCA__A
........((((..((((((((...((....)).))))))))........................................................((((.....)))).)))).... (-18.99 = -19.38 +   0.39)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:34:47 2006