Locus 698

Sequence ID 3R_DroMel_CAF1
Location 2,490,282 – 2,490,379
Length 97
Max. P 0.953969
window1111

overview

Window 1

Location 2,490,282 – 2,490,379
Length 97
Sequences 5
Columns 118
Reading direction forward
Mean pairwise identity 76.65
Mean single sequence MFE -18.70
Consensus MFE -16.32
Energy contribution -16.20
Covariance contribution -0.12
Combinations/Pair 1.12
Mean z-score -1.49
Structure conservation index 0.87
SVM decision value 1.44
SVM RNA-class probability 0.953969
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 2490282 97 + 27905053
---------ACAGUCACAGUCACAAUCAUAAUCACCAUCCACAUUCACAUUCACAUUCGCAUUCAC-AUCACGGUAGCAGUAAC------AGCAGCACAGACUGUGACAG-----UUG
---------...(((((((((............(((..............................-.....))).((.((...------.)).))...)))))))))..-----... ( -18.15)
>DroSec_CAF1 17737 85 + 1
---------ACAGUCACAGUCGCAUUCAUAAUCACCAUCCACAUUCACAUU------------CAC-AUCACGGUAGCAGUAAC------AGCAGCACAGACUGUGACAG-----UUG
---------...(((((((((............(((...............------------...-.....))).((.((...------.)).))...)))))))))..-----... ( -18.60)
>DroSim_CAF1 17826 85 + 1
---------ACAGUCACAGUCGCAAUCAUAAUCACCAUCCACAUUCACAUU------------CAC-AUCACGGUAGCAGUAAC------AGCAGCACAGACUGUGACAG-----UUG
---------...(((((((((............(((...............------------...-.....))).((.((...------.)).))...)))))))))..-----... ( -18.60)
>DroEre_CAF1 19132 94 + 1
ACUGCAGUCACAGUCACAGUCACAAUCGUAAUCGCC-UCCACGUUCA------CAUU------CCCUCUCACGGUAGCAGCAAC------AGCAGCACAGACUGCGACAG-----UUG
............(((.(((((............((.-.((.......------....------.........))..)).((...------.))......))))).)))..-----... ( -17.35)
>DroYak_CAF1 18804 108 + 1
--UGCACU-GCAGUCACAGUCACAAUCAUAAUCACC-UUCACGUUCACAUCCACAUU------CCCUCUCACGGUAGCAGUAAUACUCGUAGCAGCACAGACUGUGACAGUUCAGUUG
--...(((-(..(((((((((...............-.....((........))...------..((((.((((((.......))).))))).))....)))))))))....)))).. ( -20.80)
>consensus
_________ACAGUCACAGUCACAAUCAUAAUCACCAUCCACAUUCACAUU__CAUU______CAC_AUCACGGUAGCAGUAAC______AGCAGCACAGACUGUGACAG_____UUG
............(((((((((............(((....................................))).((.((..........)).))...))))))))).......... (-16.32 = -16.20 +  -0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:43 2006