| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 18,379,052 – 18,379,153 |
| Length | 101 |
| Max. P | 0.774921 |
| Location | 18,379,052 – 18,379,153 |
|---|---|
| Length | 101 |
| Sequences | 4 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 77.49 |
| Mean single sequence MFE | -25.27 |
| Consensus MFE | -13.01 |
| Energy contribution | -13.70 |
| Covariance contribution | 0.69 |
| Combinations/Pair | 1.06 |
| Mean z-score | -2.28 |
| Structure conservation index | 0.51 |
| SVM decision value | 0.54 |
| SVM RNA-class probability | 0.774921 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 18379052 101 + 27905053 GCAUACGAAUGGGUCUGGGAAUGGCAAUACC----UAUAUCUAUAUAGCUAUAUGGCUAUAUGGCUAUAUGUCUAUAUGGCUAUAUGGCUAAGGGAAGGCGAAGU- ((......((((((.((((.((....)).))----)).)))))).((((((((((((((((((((.....).))))))))))))))))))).......)).....- ( -36.50) >DroSec_CAF1 43274 77 + 1 GCAUACGAAUGGGUCUGGGAAUGGCAAUACC----UAUAUCUAUAUAGCUAUAUAG------------------------CUAUAUGGCUAAGGGAAGGCGAAGU- ((..........(((.......)))....((----(.((.((((((((((....))------------------------)))))))).)).)))...)).....- ( -19.90) >DroSim_CAF1 44589 85 + 1 GCAUACGAAUGGGUCUGGGAAUGGCAACACC----UAUAUCUAUAUAUCUAUAUAGCUUUAUG----------------GCUAUAUGGCUAAGGGAAGGCGAAGU- ((......((((((.((((..((....))))----)).)))))).((.((((((((((....)----------------))))))))).)).......)).....- ( -24.10) >DroYak_CAF1 44693 87 + 1 GCAUACGAAUGGGUCUGGGAAUGGCUACGCCGUGCUAUA---GUAUACCUAUAUUGCUAUAUA----------------GCUAUAUGGUUAAGGGAAGGCGAUGUC ((((.......((((.......)))).((((((((....---)))).(((.....(((((((.----------------...)))))))...)))..)))))))). ( -20.60) >consensus GCAUACGAAUGGGUCUGGGAAUGGCAACACC____UAUAUCUAUAUAGCUAUAUAGCUAUAUG________________GCUAUAUGGCUAAGGGAAGGCGAAGU_ ((..........(((.......)))....................((((((((((((......................)))))))))))).......))...... (-13.01 = -13.70 + 0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:34:31 2006