Locus 697

Sequence ID 3R_DroMel_CAF1
Location 2,489,048 – 2,489,140
Length 92
Max. P 0.641585
window1110

overview

Window 0

Location 2,489,048 – 2,489,140
Length 92
Sequences 6
Columns 100
Reading direction forward
Mean pairwise identity 77.11
Mean single sequence MFE -17.65
Consensus MFE -13.75
Energy contribution -13.78
Covariance contribution 0.03
Combinations/Pair 1.22
Mean z-score -0.89
Structure conservation index 0.78
SVM decision value 0.22
SVM RNA-class probability 0.641585
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 2489048 92 + 27905053
GCCGAUCCC--UAACGCUGAUCCUUAGCUGUCGCAGCUAAUCAUUGUGAGAGUUCA------AAUCCUCGCCAGCUCAUCUACCCCAAGUCGCUCUCCCU
.........--....((((....(((((((...))))))).....(((((..(...------.)..)))))))))......................... ( -16.80)
>DroSec_CAF1 16510 92 + 1
GUCGAUCCC--UAACGCUGAUCCUUAGCUGUCGCAGCUAAUCAUUGUGAGAUUUCC------GAUCCUCGCCAGCUCAUCUACCCCAAGCCUCCCUCCCU
.........--....((((....(((((((...))))))).....(((((......------....)))))))))......................... ( -16.50)
>DroSim_CAF1 16608 92 + 1
GUCGAUCCC--UAACGCUGAUCCUUAGCUGUCGCAGCUAAUCAUUGUGAGAUUUCC------GAUCCUCGCCAGCUCAUCUACCCCAAGCCUCCCUCCCU
.........--....((((....(((((((...))))))).....(((((......------....)))))))))......................... ( -16.50)
>DroEre_CAF1 17895 81 + 1
GCCAAUCCC--UAACGCUGAUCCUUAGCUGUCGCAGCUAAUCAUUGUGAGAGUUCC------GAUCCUCGCCGGCUCAUCUACCCCA-AA----------
(((......--......((((...((((((...))))))))))..(((((..(...------.)..))))).)))............-..---------- ( -16.90)
>DroYak_CAF1 17630 82 + 1
GCCGAUCCC--UAAUGCUGAUCCUUAGCUGUCGCAGCUAAUCAUUGUGAGAGUUCC------GAUCCUCGCCGGCUUAUCUCCCCCAAAA----------
((((.....--......((((...((((((...))))))))))..(((((..(...------.)..)))))))))...............---------- ( -18.70)
>DroPer_CAF1 15318 84 + 1
AACGAUCCCCUCGGUGUUGAUCUCUAGCUGUCGCAGCUAAUCAUUGUGAGAGUUUAGGACCCCAUACUCGUAGGAUAUUC-ACCC---------------
....((((...((((((.(.(((..((((.((((((.......)))))).))))..)))..).)))).))..))))....-....--------------- ( -20.50)
>consensus
GCCGAUCCC__UAACGCUGAUCCUUAGCUGUCGCAGCUAAUCAUUGUGAGAGUUCC______GAUCCUCGCCAGCUCAUCUACCCCAAGA__________
...............((((....(((((((...))))))).....(((((..((........))..)))))))))......................... (-13.75 = -13.78 +   0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:42 2006