Locus 6965

Sequence ID 3R_DroMel_CAF1
Location 18,359,394 – 18,359,491
Length 97
Max. P 0.938662
window11294

overview

Window 4

Location 18,359,394 – 18,359,491
Length 97
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 75.67
Mean single sequence MFE -29.38
Consensus MFE -19.55
Energy contribution -20.13
Covariance contribution 0.58
Combinations/Pair 1.04
Mean z-score -1.74
Structure conservation index 0.67
SVM decision value 1.29
SVM RNA-class probability 0.938662
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 18359394 97 + 27905053
-----------------------CCAAUACCAACCUUGGUGCGCAGAUCCUCGUGCUCCACGAAGAAGUUGACCAUCCGGUCAACAAUGGUCGUCGUCUCGUUCAGUCUGACCGACAUAU
-----------------------.....((((..(.(((.((((........)))).))).).....(((((((....)))))))..)))).((((((...........)).)))).... ( -28.70)
>DroPse_CAF1 28882 115 + 1
UAGGCACUAGUC-----CGCUCUGAAGGACUCACCUUUGUGCGCAGAUCCUCGUGCUCCACAAAGAAGUUGACCAUCCGGUCAACAAUAGUGUUCGUCUCGUUCAGUCUGACCGACAUCU
..((((((((((-----(........))))....(((((((.((((.....).)))..)))))))..(((((((....)))))))..))))))).(((..(((......))).))).... ( -35.90)
>DroWil_CAF1 28109 97 + 1
-----------------------UCUUCGCUCACCUUUGUGCGCAAAUCCUCGUGCUCAACAAAGAAGUUGACCAUCUUGUCAACAAUUGUUUGGGUCUCGUUUAGUCUGACCGACAUUU
-----------------------.....(((((.((((((((((........))))...))))))..((((((......)))))).......)))))........(((.....))).... ( -22.20)
>DroMoj_CAF1 28311 117 + 1
---UCAUCUCAUCCAACUAACAACUUUUACAGACCUUUGUGCGCAGAUCCUCGUGCUCCACGAAGAAGUUGACCAUCUUGUCAACAAUAGUUUGUGUCUCGUUCAGUCUGACCGACAUAU
---..........................(((((...((.(((((((((.(((((...))))).)).((((((......)))))).....)))))))..))....))))).......... ( -25.50)
>DroAna_CAF1 33587 113 + 1
UAUAAAG--UUC-----UUCUCCCGCAUACUCACCUUGGUGCGCAGAUCCUCGUGCUCCACAAAGAAGUUGACCAUUCGGUCAACAAUGGUUUGUGUCUCGUUCAGUCUGACCGACAUUU
.......--...-----......((.((((..(((.(((.((((........)))).))).......(((((((....)))))))...)))..))))..))....(((.....))).... ( -28.10)
>DroPer_CAF1 35837 115 + 1
UAGGCACUAGUC-----CGCUCUGAAGGACUCACCUUUGUGCGCAGAUCCUCGUGCUCCACAAAGAAGUUGACCAUCCGGUCAACAAUAGUGUUCGUCUCGUUCAGUCUGACCGACAUCU
..((((((((((-----(........))))....(((((((.((((.....).)))..)))))))..(((((((....)))))))..))))))).(((..(((......))).))).... ( -35.90)
>consensus
____CA____UC_______CUC_CAAAUACUCACCUUUGUGCGCAGAUCCUCGUGCUCCACAAAGAAGUUGACCAUCCGGUCAACAAUAGUUUGCGUCUCGUUCAGUCUGACCGACAUAU
..................................((((((((((........))))...))))))..(((((((....)))))))..........(((..(((......))).))).... (-19.55 = -20.13 +   0.58)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:34:21 2006