Locus 696

Sequence ID 3R_DroMel_CAF1
Location 2,485,176 – 2,485,289
Length 113
Max. P 0.862091
window1109

overview

Window 9

Location 2,485,176 – 2,485,289
Length 113
Sequences 6
Columns 114
Reading direction reverse
Mean pairwise identity 77.24
Mean single sequence MFE -40.20
Consensus MFE -19.32
Energy contribution -20.30
Covariance contribution 0.98
Combinations/Pair 1.33
Mean z-score -2.26
Structure conservation index 0.48
SVM decision value 0.83
SVM RNA-class probability 0.862091
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 2485176 113 - 27905053
GGCCAAAAAUGAGCUUGCUAUCCUCAUUCCGUGCCACCGAGUUGUGUCCCAAAACGGAGCUUCGAAGUACCACUGGGGCGCAGCCCUCAAGCAACUGCUUCUGGCCGAUGAAA-
(((((.....(((((((((..........((......)).(((((((((((....((.(((....))).))..))))))))))).....)))))..)))).))))).......- ( -36.30)
>DroSec_CAF1 12648 113 - 1
GGCCAAAAAUGAGGUGGCCAUCCUUAUUCCUUGCCACCGGGUUGUGUCCCAAAACGGAGCUUCGAAGUACCACUGGGGCGCUGCCCUCAAGCAGCAGCUGCUGGCAGAUGAAA-
.(((.....(((((((((..............))))))((((.((((((((....((.(((....))).))..)))))))).)))))))(((((...))))))))........- ( -44.94)
>DroSim_CAF1 12613 113 - 1
GGCCAAAAAUGAGGUGGCUAUCCUCAUUCCGUGCCACCGGGUUGUGUCCCAAAACGGAGCUUCGAAGUACCACUGGGGCGCUGCCCUCAAGCAGCAGCUGCUGGCCGAUGAAA-
((((.....(((((((((..............))))))((((.((((((((....((.(((....))).))..)))))))).)))))))(((((...))))))))).......- ( -49.44)
>DroEre_CAF1 12687 113 - 1
GGCACGGAAUGAGGUGGCAGUCCUCAUUCCGUGCCACAGGAUUGUGUCCCAAAAUGGAGCUUCGAAGUACCACUGGGGCACAGCCCUCAAGCAGCAGCUCCUAGCCUAUGAGA-
((((((((((((((.......))))))))))))))...((.((((((((((...(((.(((....))).))).))))))))))))((((....((........))...)))).- ( -54.40)
>DroWil_CAF1 18767 114 - 1
GGGACGAAAUGAGGUUUCUAUUCUCAUACCAUGCCACCGGAUUGUGUCCCAGAAUGGACAAUUAAAAUAUGGCUGGGGUGGUCAGCUUAAAAAACAAUUGUUAGACUUUGAAGC
..(((((.((((((.......))))))(((((.((((((.(((.(((((......))))).....))).))).))).)))))...............)))))............ ( -28.50)
>DroAna_CAF1 12255 113 - 1
GGCCAAAAAUGAAGUAGCUAUCCUCAUUCCUUGCCACCGAAUUGUAUCUCAAAACGGAUGCAGCAAGUACCAUUGGGGUGGUGCUCUCAAACAGCAGCUUCUUGAUUACGAAA-
.......(((.(((.((((.............((((((...((((((((......))))))))(((......))).))))))(((.......))))))).))).)))......- ( -27.60)
>consensus
GGCCAAAAAUGAGGUGGCUAUCCUCAUUCCGUGCCACCGGAUUGUGUCCCAAAACGGAGCUUCGAAGUACCACUGGGGCGCUGCCCUCAAGCAGCAGCUGCUGGCCGAUGAAA_
(((....(((((((.......)))))))....)))...((...((((((((....((.((......)).))..))))))))...))............................ (-19.32 = -20.30 +   0.98)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:41 2006