Locus 695

Sequence ID 3R_DroMel_CAF1
Location 2,479,777 – 2,479,875
Length 98
Max. P 0.889916
window1107 window1108

overview

Window 7

Location 2,479,777 – 2,479,875
Length 98
Sequences 6
Columns 99
Reading direction forward
Mean pairwise identity 80.47
Mean single sequence MFE -29.33
Consensus MFE -20.67
Energy contribution -21.23
Covariance contribution 0.56
Combinations/Pair 1.16
Mean z-score -2.10
Structure conservation index 0.70
SVM decision value 0.96
SVM RNA-class probability 0.889916
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 2479777 98 + 27905053
GGCGUCCGAGGAAGGACAGCCUUGCCUCAAACAUGAGUCACACGCAAGCUUACUUCCUGGAUGAAGGUAAGCCUCUAAUCGCCGACUAAUU-GAAACUA
(((((((.((((((...(((.((((((((....))))......)))))))..))))))))))..(((....)))......)))........-....... ( -29.60)
>DroVir_CAF1 39085 95 + 1
GCCGUCCCCGAAAGGACAGCCUUGGCUCUAAUAUGAGUCAGACGCAAGCUUACUUUCUGGACGAAGGUAAGACUUAUA-CGGAGUU-UA--AGAAACUA
((.((((......)))).))(((((((((..((((((((.(.(....))((((((((.....))))))))))))))))-.)))).)-))--))...... ( -30.60)
>DroPse_CAF1 7034 98 + 1
GUCGUCCGAGGAAGGGUAGCCUAACAUCAAACAAGAGUCAGGCGCAAGCUUACUUCCUGGAUGAAGGUAAGCCUCAAACUACAGACUAACG-GAUUACA
((.((((((((((((((.((((.((.((......)))).))))....)))..))))))(..(((.((....)))))..)..........))-))).)). ( -28.40)
>DroYak_CAF1 7340 98 + 1
GGCGUCCGAGGAAGGACAGCCUUGCCUCAAACAUGAGUCAGACGCAAGCUUACUUCCUGGAUGAAGGUAAGCCUCUAGUCACCGACUAAUU-GGAACUA
..(((((.((((((...(((.((((.((..((....))..)).)))))))..)))))))))))..(((...((..(((((...)))))...-)).))). ( -30.80)
>DroAna_CAF1 7338 98 + 1
GGCGUCCGAGGAAGGACAGCCUUGCUUCAAACAUGAGUCAGACGCAAGCUUACUUCCUGGAUGAAGGUAAGCCUCUAAUCACCGACAAACA-AACCACA
(((((((.((((((...(((.((((.((..((....))..)).)))))))..))))))))))).(((....))).......))........-....... ( -28.20)
>DroPer_CAF1 7031 98 + 1
GUCGUCCGAGGAAGGGUAGCCUAACAUCAAACAAGAGUCAGGCGCAAGCUUACUUCCUGGAUGAAGGUAAGCCUCAAACUACAGACUAACG-GAUUACA
((.((((((((((((((.((((.((.((......)))).))))....)))..))))))(..(((.((....)))))..)..........))-))).)). ( -28.40)
>consensus
GGCGUCCGAGGAAGGACAGCCUUGCCUCAAACAUGAGUCAGACGCAAGCUUACUUCCUGGAUGAAGGUAAGCCUCAAAUCACAGACUAACG_GAAAACA
..(((((.((((((...(((.((((.((..((....))..)).)))))))..))))))))))).(((....)))......................... (-20.67 = -21.23 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 8

Location 2,479,777 – 2,479,875
Length 98
Sequences 6
Columns 99
Reading direction reverse
Mean pairwise identity 80.47
Mean single sequence MFE -29.97
Consensus MFE -19.80
Energy contribution -20.33
Covariance contribution 0.53
Combinations/Pair 1.12
Mean z-score -1.55
Structure conservation index 0.66
SVM decision value 0.27
SVM RNA-class probability 0.661871
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 2479777 98 - 27905053
UAGUUUC-AAUUAGUCGGCGAUUAGAGGCUUACCUUCAUCCAGGAAGUAAGCUUGCGUGUGACUCAUGUUUGAGGCAAGGCUGUCCUUCCUCGGACGCC
..(((((-((..((((((((.....((((((((.(((......))))))))))).))).))))).....)))))))..(((.((((......))))))) ( -32.20)
>DroVir_CAF1 39085 95 - 1
UAGUUUCU--UA-AACUCCG-UAUAAGUCUUACCUUCGUCCAGAAAGUAAGCUUGCGUCUGACUCAUAUUAGAGCCAAGGCUGUCCUUUCGGGGACGGC
........--..-.....((-((..((.(((((.(((.....))).)))))))))))..((.(((......))).))..((((((((....)))))))) ( -24.60)
>DroPse_CAF1 7034 98 - 1
UGUAAUC-CGUUAGUCUGUAGUUUGAGGCUUACCUUCAUCCAGGAAGUAAGCUUGCGCCUGACUCUUGUUUGAUGUUAGGCUACCCUUCCUCGGACGAC
.......-.....(((((.((....((((((((.(((......)))))))))))..(((((((((......)).)))))))........)))))))... ( -29.90)
>DroYak_CAF1 7340 98 - 1
UAGUUCC-AAUUAGUCGGUGACUAGAGGCUUACCUUCAUCCAGGAAGUAAGCUUGCGUCUGACUCAUGUUUGAGGCAAGGCUGUCCUUCCUCGGACGCC
(((((((-........)).))))).((((((((.(((......)))))))))))(((((((((....))).((((.((((....)))))))))))))). ( -33.10)
>DroAna_CAF1 7338 98 - 1
UGUGGUU-UGUUUGUCGGUGAUUAGAGGCUUACCUUCAUCCAGGAAGUAAGCUUGCGUCUGACUCAUGUUUGAAGCAAGGCUGUCCUUCCUCGGACGCC
.......-........((((....((((....))))..(((((((((..(((((((.((.(((....))).)).)))).)))...)))))).))))))) ( -30.10)
>DroPer_CAF1 7031 98 - 1
UGUAAUC-CGUUAGUCUGUAGUUUGAGGCUUACCUUCAUCCAGGAAGUAAGCUUGCGCCUGACUCUUGUUUGAUGUUAGGCUACCCUUCCUCGGACGAC
.......-.....(((((.((....((((((((.(((......)))))))))))..(((((((((......)).)))))))........)))))))... ( -29.90)
>consensus
UAGUUUC_AGUUAGUCGGUGAUUAGAGGCUUACCUUCAUCCAGGAAGUAAGCUUGCGUCUGACUCAUGUUUGAGGCAAGGCUGUCCUUCCUCGGACGCC
........................((((....))))..(((((((((..(((((((.((.(((....))).)).)).)))))...)))))).))).... (-19.80 = -20.33 +   0.53)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:40 2006