Locus 6928

Sequence ID 3R_DroMel_CAF1
Location 18,271,084 – 18,271,204
Length 120
Max. P 0.922010
window11240

overview

Window 0

Location 18,271,084 – 18,271,204
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 94.58
Mean single sequence MFE -33.75
Consensus MFE -29.98
Energy contribution -30.60
Covariance contribution 0.62
Combinations/Pair 1.06
Mean z-score -2.12
Structure conservation index 0.89
SVM decision value 1.14
SVM RNA-class probability 0.922010
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 18271084 120 + 27905053
AUCACCUUGAGUCCCAUGGGUCCCUCCCAAUCGUAGAGGCGACGCAGAUUUUUGCAGCACUCUAAAUCGAAAACCAGAACCUUUUUGGUCUUCUGUAUUUCGGGGUUCUCCAGCACAUAU
.....((.(((.(((.((((.....))))....(((((((...((((....)))).)).)))))...(((((..(((((((.....)))..))))..))))))))..))).))....... ( -35.20)
>DroSec_CAF1 27303 120 + 1
AUCACCUUGAGUCCCAUGGGUCCCUCCCAAUCGUAGAGGCGACGCAUAUUUUUGCAGCACUCUAAAUCGAAAACCAGAACCUUCUUGGUCUUCUGUAUUUCGGGGUUCUCCAGCACAUAU
.....((.(((.(((.((((.....))))....(((((((...(((......))).)).)))))...(((((..(((((((.....)))..))))..))))))))..))).))....... ( -35.60)
>DroSim_CAF1 28290 120 + 1
AUCACCUUGAGUCCCAUGGGUCCCUCCCAAUCGUAGAGGCGACGCAGAUUUUUGCAGCACUCUAAAUCGAAAACCAGAACCUUCUUGGUCUUCUGUAUUUCGGGGUUCUCCAGCACAUAU
.....((.(((.(((.((((.....))))....(((((((...((((....)))).)).)))))...(((((..(((((((.....)))..))))..))))))))..))).))....... ( -35.20)
>DroYak_CAF1 27803 120 + 1
AGCGCUUCGAGUCCCAUGGGUCCCUUCCAAUCGUAGAGGCAACGCAGACUUUUACAGCACUCUAAAUCAAAAACCAGAACCUUCUUGGUCUUCUGUAUGUCGGGGUUCUCAAGCACAUAU
.(.((((.((..(((.((.((..((((........))))..)).))(((...(((((............((.((((((....)).)))).))))))).))))))..))..)))).).... ( -29.00)
>consensus
AUCACCUUGAGUCCCAUGGGUCCCUCCCAAUCGUAGAGGCGACGCAGAUUUUUGCAGCACUCUAAAUCGAAAACCAGAACCUUCUUGGUCUUCUGUAUUUCGGGGUUCUCCAGCACAUAU
.....((.(((.(((.((((.....))))....(((((((...((((....)))).)).)))))...(((((..(((((((.....)))..))))..))))))))..))).))....... (-29.98 = -30.60 +   0.62)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:33:28 2006