Locus 6913

Sequence ID 3R_DroMel_CAF1
Location 18,253,603 – 18,253,713
Length 110
Max. P 0.846761
window11219

overview

Window 9

Location 18,253,603 – 18,253,713
Length 110
Sequences 6
Columns 116
Reading direction reverse
Mean pairwise identity 82.92
Mean single sequence MFE -48.05
Consensus MFE -33.17
Energy contribution -34.40
Covariance contribution 1.23
Combinations/Pair 1.18
Mean z-score -2.88
Structure conservation index 0.69
SVM decision value 0.77
SVM RNA-class probability 0.846761
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 18253603 110 - 27905053
GCUGGCGGUUCUUCUGCUGGCUGCUCUGAAGUUACAUGUGACCAAUGCGGAAUCCAGUGGCGAUCACAAGGAGGGGGAGG------UGGAGAGCGCCAGCACGGAGAGCAACGAGA
.((.(..((((((((((((((.(((((...(((((.((.((((.....))..)))))))))..((((............)------))))))))))))))).)))))))..).)). ( -42.20)
>DroPse_CAF1 14046 110 - 1
UCUGGUGCUCCUCUUGCUGGCCGCUCUCACGCUCCAGUUGGCCAGCGCC------GGCGGGGAGCCGGAGCAGGGGGAGGGCGAGAGCGAGAGCGCCAGCACCGAGAGCAACGAGA
(((.((((((.((.(((((((.((((((..(((((.((((((....)))------)))((....))))))).........((....)))))))))))))))..)))))).)).))) ( -61.10)
>DroSec_CAF1 9788 110 - 1
GCUGGCGGUUCUUCUGCUGGCUGCUCUGAAGCUCCAUGUGACCAAUGCGGAAUCCAGUGGCGAUCACAAGGAGGGGGAGG------UGAAGAGCGCCAGCACGGAGAGCAACGAGA
.((.(..((((((((((((((.(((((..(.((((......((.....))..(((.(((.....)))..)))...)))).------)..)))))))))))).)))))))..).)). ( -48.60)
>DroSim_CAF1 10220 110 - 1
GCUGGCGGUUCUUCUGCUGGCUGCUCUGAAGCUCCAUGUGACGAAUGCGGAAUCCAGUGGCGAUCACAAGGAGGGGGAGG------UGGAGAGCUCCAACACAGAGAGCAACGAGA
((..((((.....))))..))((((((....((((.(((((((...((........))..)).))))).))))..((((.------(....).)))).......))))))...... ( -40.70)
>DroEre_CAF1 10109 110 - 1
GCUGGCGGUUCUUCUGCUGGCUGCUCUAAAGCUCCAUGUGACCAAUGCGGAAACCAGUGGCAAUCAAAAGGAGGUGGAGG------UGGAGAGUGCCAGCACGGAGAGCAACGAGA
.((.(..((((((((((((((.(((((..(.((((((.((.(((.((.(....))).))))).((.....)).)))))).------)..)))))))))))).)))))))..).)). ( -50.60)
>DroYak_CAF1 9788 104 - 1
GCUGGCGGUUCUUCUGCUGGCUGCUCUAAAGCUCCAUGUGACCAAUGCGGAAUCCAGUGGCGAUCAAAAGGAGG------------UGGAGAGUGCCAGCACGGAGAGCAACGAGA
.((.(..((((((((((((((.(((((..(.((((...((((((.((.(....))).)))...)))...)))).------------)..)))))))))))).)))))))..).)). ( -45.10)
>consensus
GCUGGCGGUUCUUCUGCUGGCUGCUCUGAAGCUCCAUGUGACCAAUGCGGAAUCCAGUGGCGAUCACAAGGAGGGGGAGG______UGGAGAGCGCCAGCACGGAGAGCAACGAGA
.((.(..((((((((((((((.(((((....((((.(((((....(((........)))....))))).))))................)))))))))))).)))))))..).)). (-33.17 = -34.40 +   1.23)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:33:07 2006