Locus 691

Sequence ID 3R_DroMel_CAF1
Location 2,466,991 – 2,467,109
Length 118
Max. P 0.509281
window1097

overview

Window 7

Location 2,466,991 – 2,467,109
Length 118
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 86.41
Mean single sequence MFE -22.57
Consensus MFE -18.88
Energy contribution -18.07
Covariance contribution -0.81
Combinations/Pair 1.25
Mean z-score -1.36
Structure conservation index 0.84
SVM decision value -0.05
SVM RNA-class probability 0.509281
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 2466991 118 - 27905053
AAUCUUGUCAAGUACCUCGCUUAUCGCUACUAAAAACACAAUUACUAGACUCCUUAUUAAAAGCAUAGUU--UUGAAAAGAGGCUCUUCGGGAGUCUCGCUACGAAAAUUUUGGCAUCUA
.....(((((((....(((...................(((..((((..((..........))..)))).--)))....(((((((.....)))))))....)))....))))))).... ( -21.90)
>DroSec_CAF1 25761 118 - 1
AAUCUUGUCAAGUACCUCGCUUAUUGCUACCAAAAACAUAAUCACUAGAAUCCUUAUUAAACGCAUAGUU--UUGAGAAGAGGCUCUUCGGGAGUCUCACUACGAAAAUUUUGGCAUCUA
.....(((((((....(((((((..((((........((((((....))....))))........)))).--.))))..(((((((.....)))))))....)))....))))))).... ( -22.59)
>DroSim_CAF1 25255 118 - 1
AAUCUUGUCAAGUACCUCGCUUAUUGCUACCAAAAACACAAUCACUAUAAUCCUUAUUAAACGCAUAGUU--UUGAGAAGAGGCUCUUCGAGAGUCUCACUACGAAAAUUUUGGCAUCUA
.....(((((((....(((((((..((((....................................)))).--.))))..(((((((.....)))))))....)))....))))))).... ( -22.12)
>DroEre_CAF1 27002 117 - 1
ACUCUUGCCAAUUACCUACCA--AAACUACCAAAAAGACAAGUAUUAAAAUCCUUAUUAAACGCAUGGUUAUUUGUGAAGAGACUCUU-GGGAGUCUCUCUACUAAAAUUUUGGCAUCUA
.....((((((..........--(((..((((........((((..........)))).......))))..)))(((.((((((((..-..)))))))).))).......)))))).... ( -23.66)
>consensus
AAUCUUGUCAAGUACCUCGCUUAUUGCUACCAAAAACACAAUCACUAGAAUCCUUAUUAAACGCAUAGUU__UUGAGAAGAGGCUCUUCGGGAGUCUCACUACGAAAAUUUUGGCAUCUA
.....(((((((....(((...................(((..((((..................))))...)))....(((((((.....)))))))....)))....))))))).... (-18.88 = -18.07 +  -0.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:30 2006