Locus 6905

Sequence ID 3R_DroMel_CAF1
Location 18,240,080 – 18,240,170
Length 90
Max. P 0.651704
window11210

overview

Window 0

Location 18,240,080 – 18,240,170
Length 90
Sequences 6
Columns 94
Reading direction forward
Mean pairwise identity 79.83
Mean single sequence MFE -26.67
Consensus MFE -18.36
Energy contribution -17.67
Covariance contribution -0.69
Combinations/Pair 1.16
Mean z-score -1.35
Structure conservation index 0.69
SVM decision value 0.25
SVM RNA-class probability 0.651704
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 18240080 90 + 27905053
UAGUCACUUCAUGAUAUAUUUAGGUAUCGCUGCAUGAAGGUGCGCC-UUCCGAGCUUGACUAGAGCCGUU-AUCUCUACCUCGAGCUCCA-C-A
..((..(((((((..((((....)))).....)))))))..))...-....((((((((.(((((.....-..)))))..))))))))..-.-. ( -24.50)
>DroPse_CAF1 13893 90 + 1
GAGUAUGUACGA-GAGUAUUUAGGAAACGUUGCAUGUCGGCGCGCCCCUUGGAGCUUGACUAGAGCCCAU-AUCUCUAGCUCGGGCUCCC-C-C
..(..(((.(((-.((((....(....)..))).).))))))..).....(((((((((((((((.....-..)))))).))))))))).-.-. ( -30.20)
>DroEre_CAF1 8287 90 + 1
UAGUCACUUCAUGAUAAAUUUAGGAAUCGCUGCAUGAAGGUGCGCC-UUCCGAGCUUGACUAGAGCCGUU-AUCUCUACCUCGAGCUCCA-C-A
..((((.....)))).......((((..((.((((....)))))).-))))((((((((.(((((.....-..)))))..))))))))..-.-. ( -25.00)
>DroYak_CAF1 8241 88 + 1
UAGUCACUUCAUGAU--AUUUAGGAAUCGCUGCAUGAAGGUGCGCC-UUCCGAGCUUGACUAGAGCCGUU-AUCUCUACCUCGAGCUCCA-C-A
..((((.....))))--.....((((..((.((((....)))))).-))))((((((((.(((((.....-..)))))..))))))))..-.-. ( -25.00)
>DroAna_CAF1 8251 90 + 1
UAG--AGUUCG-GCUGUAUUUAGGAAUCGCUGCAUGAAGGCGCGCC-UCCCGAGCUUGACUAGAGCCACUAAUCUCUACCUCGAGCUCCCAUUU
...--.....(-(.........(((..(((.((......)))))..-))).((((((((.(((((........)))))..)))))))))).... ( -25.10)
>DroPer_CAF1 13952 90 + 1
GAGUAUGUACGA-GAGUAUUUAGGAAACGUUGCAUGUCGGCGCGCCCCUUGGAGCUUGACUAGAGCCCAU-AUCUCUAGCUCGGGCUCCC-C-C
..(..(((.(((-.((((....(....)..))).).))))))..).....(((((((((((((((.....-..)))))).))))))))).-.-. ( -30.20)
>consensus
UAGUCACUUCAUGAUGUAUUUAGGAAUCGCUGCAUGAAGGCGCGCC_UUCCGAGCUUGACUAGAGCCGUU_AUCUCUACCUCGAGCUCCA_C_A
......................((...((((.......))))..)).....((((((((.(((((........)))))..))))))))...... (-18.36 = -17.67 +  -0.69)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:32:59 2006