| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 2,466,379 – 2,466,470 |
| Length | 91 |
| Max. P | 0.633526 |
| Location | 2,466,379 – 2,466,470 |
|---|---|
| Length | 91 |
| Sequences | 4 |
| Columns | 91 |
| Reading direction | reverse |
| Mean pairwise identity | 90.11 |
| Mean single sequence MFE | -23.70 |
| Consensus MFE | -17.02 |
| Energy contribution | -20.02 |
| Covariance contribution | 3.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.90 |
| Structure conservation index | 0.72 |
| SVM decision value | 0.21 |
| SVM RNA-class probability | 0.633526 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2466379 91 - 27905053 UUUCCAUUGCAAUCAAUUCGAUUGUUUGUUUAAUAAAUCUGCUGCUCAAGUGUGGCGGCUGGACACUUGCAAAGGCAGUCGAAUACACAAU ...............((((((((((((((.........((((..(......)..))))..........))))..))))))))))....... ( -22.21) >DroSec_CAF1 25252 78 - 1 UUUCUAUUGCAAU-------------UGUUUAAUAAAUCUGCUGCUCAAGUGCGGCGGCGGGACACUUGCAAAGGCAGUCGAAUACACAAU .(((.(((((..(-------------(((........(((((((((.......)))))))))......))))..))))).)))........ ( -21.54) >DroSim_CAF1 22609 91 - 1 UUUCUAUUGCAAUCAAUUCGAUUGUUUGUUUAAUAAAUCUGCUGCUCAAGUGUGGCGGCGGGACACUUGCAAAGGCAGUCGAAUACACAAU ...............((((((((((((..........((((((((.((....))))))))))..........))))))))))))....... ( -25.45) >DroEre_CAF1 26707 91 - 1 UAUCUAUUGCAAUCAAUUCGAUUGUUUGUUUAAUAAAUCUGCUGCUCAAGUGUGGCGGCGGGACACUUGUAAAGGCAGUCGAAUACACAAU ...............((((((((((((...(((....((((((((.((....))))))))))....)))...))))))))))))....... ( -25.60) >consensus UUUCUAUUGCAAUCAAUUCGAUUGUUUGUUUAAUAAAUCUGCUGCUCAAGUGUGGCGGCGGGACACUUGCAAAGGCAGUCGAAUACACAAU ...............((((((((((((..........(((((((((.......)))))))))..........))))))))))))....... (-17.02 = -20.02 + 3.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:29 2006