| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 18,223,308 – 18,223,403 |
| Length | 95 |
| Max. P | 0.685419 |
| Location | 18,223,308 – 18,223,403 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 75.59 |
| Mean single sequence MFE | -21.22 |
| Consensus MFE | -17.37 |
| Energy contribution | -17.37 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -0.74 |
| Structure conservation index | 0.82 |
| SVM decision value | 0.32 |
| SVM RNA-class probability | 0.685419 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 18223308 95 - 27905053 CAUGUUAAAAAAA--GUCAAA-----------------AAGAAAACACGACGAGGAUGGGAUUCGAACCCACGCGUGCAGAGCACAUUGGAUUAGCAGUCCAACGCCUUAACCU .............--(((...-----------------..........))).(((.((((.......)))).((((((...)))).((((((.....)))))).)).....))) ( -19.02) >DroVir_CAF1 35168 99 - 1 AA-UUAACACAUA---------AAAA-----AUACAAAAAAGUAUUUCGACGAGGAUGGGAUUCGAACCCACGCGUGCAGAGCACAUUGGAUUAGCAGUCCAACGCCUUAACCA ..-..........---------..((-----((((......))))))......((.((((.......)))).((((((...)))).((((((.....)))))).)).....)). ( -20.10) >DroPse_CAF1 21267 113 - 1 UUUACAAAAUAAAAACUAAAA-AAAAAGACGGCAUCAAAAAGUUUCCCGACGAGGAUGGGAUUCGAACCCACGCGUGCAGAGCACAUUGGAUUAGCAGUCCAACGCCUUAACCU .....................-........(((........(..(((((.......)))))..)..........((((...)))).((((((.....)))))).)))....... ( -20.80) >DroSec_CAF1 25623 99 - 1 GAUGUUAAAAAAAAUGUAAAA--------------C-AAAAAUAACGCGACGAGGAUGGGAUUCGAACCCACGCGUGCAGAGCACAUUGGAUUAGCAGUCCAACGCCUUAACCU ...(((((......((.....--------------)-)........(((....(..((((.......))))..)((((...)))).((((((.....))))))))).))))).. ( -18.10) >DroMoj_CAF1 34810 100 - 1 GA-GUUAAAAAUA---------AGAA----UUUGCAAAAAGGUGUUUCGACGAGGAUGGGAUUCGAACCCACGCGUGCAGAGCACAUUGGAUUAGCAGUCCAACGCCUUAACCA (.-(((((.....---------....----...........(((((..((((..(.((((.......))))).))).)..))))).((((((.....))))))....)))))). ( -21.90) >DroAna_CAF1 29567 114 - 1 GAUAAAUAAACAAAAACCAAAAAUAAUGGGGGCGGCAAAAAGCAAACCGACGAGGAUGGGAUUCGAACCCACGCGUGCAGAGCACAUUGGAUUAGCAGUCCAACGCCUUAACCU ................(((.......)))(((((.......((...((.....)).((((.......)))).))((((...)))).((((((.....)))))))))))...... ( -27.40) >consensus GAUGUAAAAAAAA___U_AAA_A_AA_________CAAAAAGUAACCCGACGAGGAUGGGAUUCGAACCCACGCGUGCAGAGCACAUUGGAUUAGCAGUCCAACGCCUUAACCU .....................................................((.((((.......)))).((((((...)))).((((((.....)))))).)).....)). (-17.37 = -17.37 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:32:49 2006