Locus 6876

Sequence ID 3R_DroMel_CAF1
Location 18,182,538 – 18,182,638
Length 100
Max. P 0.633965
window11163

overview

Window 3

Location 18,182,538 – 18,182,638
Length 100
Sequences 5
Columns 103
Reading direction reverse
Mean pairwise identity 83.40
Mean single sequence MFE -39.15
Consensus MFE -23.31
Energy contribution -23.31
Covariance contribution 0.00
Combinations/Pair 1.32
Mean z-score -2.07
Structure conservation index 0.60
SVM decision value 0.21
SVM RNA-class probability 0.633965
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 18182538 100 - 27905053
GGACGCAUUUCGGAAUUUAACUGCCCGCGGCUG---CGGGUAGCUUGCGUUUGAUAUGGACUUUUACUUGCGCACUUGCUGUUGCCGCCGCGCGUUCGUAUCG
(((((((.............((((((((....)---)))))))..)))))))(((((((((........((((....((....))....))))))))))))). ( -35.96)
>DroSec_CAF1 6574 100 - 1
GGACGCAUUUCGGAAUUUAAGUGCCCGCGGUUG---CGGGCAGCUUGAGUUUGAUGUGGGCAUUUAUGUGUGCAAUUGCUGUUGCCGCCGCGCGUUCAGAUCG
((((((......((((((((((((((((....)---)))))).)))))))))...((((((((....))))(((((....)))))..))))))))))...... ( -43.20)
>DroSim_CAF1 5557 100 - 1
GGACGCAUUUCGGAAUUUAAGUGCCCGCGGUUG---CGGGCAGCUUGCGUUUGAUGUGGGCUUUUAUGUGUGCAAUUGCUGUUGCCGCCGCGCGUUCGUAUCG
((((((...(((((...(((((((((((....)---)))))).))))..))))).((((((......))(.(((((....)))))).))))))))))...... ( -38.70)
>DroEre_CAF1 4586 103 - 1
GGACGCAUUUCGGAAUUUCAGGGCCCGCUGCAGAAAUGGGCAGCUUGCCUUUGAUGGCGGCUUUUGCGUCAGCCCUUGCUGUUGUUGUCGCGCGUUUAGAUCG
((((((...........(((((((..(((((........)))))..))).))))..(((((....(((.((((....)))).))).)))))))))))...... ( -37.70)
>DroYak_CAF1 4689 100 - 1
GGACGCAUUUCGGAAUUUUAGAGCCCGCUGCUG---CGGGCAACUUGCGAUUGAUGGGGGCUUUUGCGUAUGCAAUUGCUGUUGUUGUCGCGCGUUUGGAUCG
((((((................((((((....)---))))).....(((((.((..(.(((..((((....))))..))).)..)))))))))))))...... ( -40.20)
>consensus
GGACGCAUUUCGGAAUUUAAGUGCCCGCGGCUG___CGGGCAGCUUGCGUUUGAUGUGGGCUUUUACGUGUGCAAUUGCUGUUGCCGCCGCGCGUUCGGAUCG
((((((.....((...........))(((((.......((((((..(((.(((....(.((......)).).))).))).)))))))))))))))))...... (-23.31 = -23.31 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:32:12 2006