| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 2,462,631 – 2,462,751 |
| Length | 120 |
| Max. P | 0.601318 |
| Location | 2,462,631 – 2,462,751 |
|---|---|
| Length | 120 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 92.78 |
| Mean single sequence MFE | -38.62 |
| Consensus MFE | -33.01 |
| Energy contribution | -33.82 |
| Covariance contribution | 0.81 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.51 |
| Structure conservation index | 0.85 |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.601318 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2462631 120 - 27905053 AAAAGUUCGAAUCCCCCUGAAUCCGGCUGCUCUGCAAUUGAUGUCCCAAUGCAAUUACCGGCGCAUUGUGCCGCUGACAGUGUGGAUUUGAGAGGCGGUUAAAUGCCGCUCCGAAUUAUU ......(((((((((.(((....((((.....((((.(((......)))))))......(((((...))))))))).))).).))))))))(..(((((.....)))))..)........ ( -38.60) >DroSec_CAF1 21626 120 - 1 AAAAGUUCGAAUCCGCCCGAAUCCGGCUGCUCUGCAAUUGAUGUCCCAAAGCAAUUACCAGCGCAUUGUGCCGCUGACAGUGUGGAUUUGAGAGGCGGUUAAAUGCCGCUCCGGAUUAUU .........(((((...((((((((((((...(((..(((......))).))).....((((((.....).))))).)))).)))))))).(..(((((.....)))))..))))))... ( -37.90) >DroSim_CAF1 18361 120 - 1 AAAAGUUCGAAUCCGCCUGAAUCCGGCUGCUCUGCAAUUGAUGUCCCAAAGCAAUUACCAGCGCAUUGUGCCGCUGACAGUGUGGAUUUGAGAGGCGGUUAAAUGCCGCUCCGGAUUAUU ......(((((((((((((....((((.((..(((..(((......))).((........)))))..))))))....))).))))))))))(..(((((.....)))))..)........ ( -41.00) >DroEre_CAF1 23089 114 - 1 AAAAGUUUGAAUCCGCCA------CUCUGCUCUGCAAUUGAUGUCCCAAAGCAAUUACCGGCGCAUUGUGCCGCUGACAGUGUGGAUUUGAGUGGCGGUUAAGUGCCGCUCCGAAUUAUU ...(((((((((((((.(------((.((((.((..((....))..)).)))).(((.((((((...)))))).))).)))))))))).((((((((......))))))))))))))... ( -37.00) >consensus AAAAGUUCGAAUCCGCCUGAAUCCGGCUGCUCUGCAAUUGAUGUCCCAAAGCAAUUACCAGCGCAUUGUGCCGCUGACAGUGUGGAUUUGAGAGGCGGUUAAAUGCCGCUCCGAAUUAUU ......(((((((((((((........((((.((..((....))..)).)))).....((((((.....).))))).))).))))))))))(..(((((.....)))))..)........ (-33.01 = -33.82 + 0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:22 2006