| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 18,172,388 – 18,172,486 |
| Length | 98 |
| Max. P | 0.887784 |
| Location | 18,172,388 – 18,172,486 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 75.52 |
| Mean single sequence MFE | -24.27 |
| Consensus MFE | -12.62 |
| Energy contribution | -12.90 |
| Covariance contribution | 0.28 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.02 |
| Structure conservation index | 0.52 |
| SVM decision value | 0.95 |
| SVM RNA-class probability | 0.887784 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 18172388 98 - 27905053 ----------GAGCCGGAAUCUUCGUCUUGCAACUUUUU----CUUGUUGCGAAAGUUUUUAAUAGUUUGUUGGCGCUUUCGCUGAUUUGCUGCAAAGCAAAGCA-AAGUUUC-- ----------.....((((.(((.(..(((((((((((.----(.....).))))))).....((((..((..(((....)))..))..))))....))))..).-)))))))-- ( -23.10) >DroGri_CAF1 216843 104 - 1 CCAUAUCCAAGUUCUAG--GCU-CUGUCUGCAACUUUUUCUCUCUUGUUGU-AAAGUUUUUAAUAGUUUGUUGGCGCUUUCGCUGAUUUGCUGUU-------GUAAAACUUUGCC ........(((((.(((--((.-..))))).))))).............((-(((((((((((((((..((..(((....)))..))..))))))-------).)))))))))). ( -29.70) >DroSim_CAF1 208489 98 - 1 ----------GAGCCGGAAUCUUCGUCCUGCAACUUUUU----CUUGUUGCGAAAGUUUUUAAUAGUUUGUUGGCGCUUUCGCUGAUUUGCUGCAAAGCAAAGCA-AAGUUUC-- ----------..((((((.......)))((((((.....----...))))))....................)))(((((.(((...(((((....)))))))))-))))...-- ( -24.30) >DroYak_CAF1 211086 92 - 1 ----------------CAAUCUUCGUCCUGCAACUUUUU----CUUGUUGCGAAAGUUUUUAAUAGUUUGUUGGCGCUUUCGCUGAUUUGCUGCAAAGCAAAGCA-AAGUUUC-- ----------------.............(((((.....----...)))))((((((..(((((.....))))).))))))(((...(((((....)))))))).-.......-- ( -20.10) >DroMoj_CAF1 257527 99 - 1 CCAUAUCCAAGUUCU----GCU-CUGUCUGAAAGUUUUUC--UCUUGUUGU-AAAGUUUUUAAUAGUUUGUUGGCGCUUUCGCUGAUUUGCUGUU-------GCA-AACUUUGUU .......((((....----...-((.......))......--.))))...(-(((((((.(((((((..((..(((....)))..))..))))))-------).)-))))))).. ( -23.04) >DroAna_CAF1 195673 93 - 1 ----------GUGCUGAAAUCUUCGUCCUGCAAGUUUUU----CUUGUUGCGAAAGUUUUUAAUAGUUUGUUGGCGCUUUCGCUGAUUUGCUGCAAAGC-----A-AAGUUUC-- ----------.((((((((..(((((...(((((.....----))))).)))))..))))...((((..((..(((....)))..))..))))...)))-----)-.......-- ( -25.40) >consensus __________GUGCUGGAAUCUUCGUCCUGCAACUUUUU____CUUGUUGCGAAAGUUUUUAAUAGUUUGUUGGCGCUUUCGCUGAUUUGCUGCAAAGC___GCA_AAGUUUC__ .............................(((((............)))))............((((..((..(((....)))..))..))))...................... (-12.62 = -12.90 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:31:59 2006