Locus 6850

Sequence ID 3R_DroMel_CAF1
Location 18,125,865 – 18,125,955
Length 90
Max. P 0.653580
window11116

overview

Window 6

Location 18,125,865 – 18,125,955
Length 90
Sequences 5
Columns 90
Reading direction reverse
Mean pairwise identity 86.12
Mean single sequence MFE -29.52
Consensus MFE -20.76
Energy contribution -21.04
Covariance contribution 0.28
Combinations/Pair 1.11
Mean z-score -1.85
Structure conservation index 0.70
SVM decision value 0.25
SVM RNA-class probability 0.653580
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 18125865 90 - 27905053
GGAUGCGAAGAUUGCUAGGCAAUUAGCUAAGGCAGAUUGCCGGGGCUCCUAAGCAGACACUUGUCGCCACGCCAGUUGGCGCCAAAACGU
(..(((..((...(((.(((((((.((....)).)))))))..)))..))..)))..)..(((.((((((....).))))).)))..... ( -31.90)
>DroSec_CAF1 154510 90 - 1
GGAUGCGGAGAUUGCUAGGCAAUUAGCUAAGGCAGAUUGCCGGGGCUCCUAAGCAGACACUUGUCGCCACGCCAGUUGGCGUCAAAACGU
(..(((..((...(((.(((((((.((....)).)))))))..)))..))..)))..)..(((.((((((....).))))).)))..... ( -34.00)
>DroSim_CAF1 159391 90 - 1
GGAUGCGGAGAUUGCUAGGCAAUUAGCUAAGGCAGAUUGCCGGGACUUCUAAGCAGACACUUGUCACCACGCCAGUUGGCGCCAAAACGU
((.(((..(((...((.(((((((.((....)).))))))).))...)))..)))(((....))).)).((((....))))......... ( -32.20)
>DroEre_CAF1 165979 76 - 1
GGAUGCAGAGAUUGCUAGGCAAUUAUCUAAGGCAGAUUGCCGGCGCUCCUAA--------------CCACGCCAGUUGGCGCCAAAACGU
(((((((((((((((...)))))).)))..(((.....))).))).)))...--------------...((((....))))......... ( -22.30)
>DroYak_CAF1 163040 76 - 1
GGAUGCGGAGAUUGCUAGGCAAUUAGCUAAGGCAGAUUGCCGGAGCUUCUAA--------------CAACGCCAGUUGGCGCCAAAACGU
((.(((..(((..(((.(((((((.((....)).)))))))..))).)))..--------------((((....)))))))))....... ( -27.20)
>consensus
GGAUGCGGAGAUUGCUAGGCAAUUAGCUAAGGCAGAUUGCCGGGGCUCCUAAGCAGACACUUGUC_CCACGCCAGUUGGCGCCAAAACGU
((....((((.......(((((((.((....)).)))))))....))))....................((((....))))))....... (-20.76 = -21.04 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:31:27 2006