Locus 685

Sequence ID	3R_DroMel_CAF1
Location	2,460,451 – 2,460,566
Length	115
Max. P	0.794704

overview

Window 6

Location	2,460,451 – 2,460,566
Length	115
Sequences	4
Columns	115
Reading direction	reverse
Mean pairwise identity	95.07
Mean single sequence MFE	-35.75
Consensus MFE	-33.36
Energy contribution	-33.80
Covariance contribution	0.44
Combinations/Pair	1.07
Mean z-score	-1.67
Structure conservation index	0.93
SVM decision value	0.60
SVM RNA-class probability	0.794704
Prediction	RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 2460451 115 - 27905053
CAAGAGCGAAGUGGAACAACUGACCGAAUCUGAAUUUGGAUCACAAAAAAUGAAUGCUGUGCAUUGUGGGGCACUGAAAGUGCUGCAGGGCACAGGGUUGAGUUCUUUCCCUGCU
....((((....(((((...(((((((((....)))))).))).......(.(((.((((((....((.(((((.....))))).))..)))))).))).)))))).....)))) ( -36.30)
>DroSec_CAF1 19423 115 - 1
CAAGAGCGAAGUGGAACAACUGACCGAAUCUGAAUUUGGAUCACAAAAAAUGAAUGCUGUGCAUUGUGGGGCACUGAAAGUGCCGCAGGGCACAUGGUUGCAUUUUAUCCCUGCU
....(((..((.(((.....(((((((((....)))))).)))...((((((...((((((..((.((.(((((.....))))).)).))..))))))..)))))).)))))))) ( -34.20)
>DroSim_CAF1 16152 115 - 1
CAAGAGCGAAGUGGAACAACUGACCGAAUCCGAAUUUAGAUCACAAAAAAUGAAUGCUGUGCAUUGUGGGGCACUGAAAGUGCCGCAGGGCACAGGGUUGCAUUUUAUCCCUGCU
....(((..((.(((....((((.((....))...)))).......(((((((((.((((((....((.(((((.....))))).))..)))))).))).)))))).)))))))) ( -34.80)
>DroEre_CAF1 20908 115 - 1
CAAGAGCGAAGUGGAACGACUGACCGAGUCCGAAUUUGGAUCACAAAAAAUGAAUGCUGUGCAUUGUGGAGCACUGAAAGUGCCGCAGGGCACAGGGUUGCAUUUUAUCCCUGCU
....(((..((.(((.....(((((((((....)))))).)))...(((((((((.((((((.(((((..((((.....))))))))).)))))).))).)))))).)))))))) ( -37.70)
>consensus
CAAGAGCGAAGUGGAACAACUGACCGAAUCCGAAUUUGGAUCACAAAAAAUGAAUGCUGUGCAUUGUGGGGCACUGAAAGUGCCGCAGGGCACAGGGUUGCAUUUUAUCCCUGCU
....(((..((.(((.....(((((((((....)))))).)))...(((((((((.((((((.((((((.((.......)).)))))).)))))).))).)))))).)))))))) (-33.36 = -33.80 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:19 2006