Locus 6826

Sequence ID 3R_DroMel_CAF1
Location 18,047,121 – 18,047,238
Length 117
Max. P 0.812447
window11081

overview

Window 1

Location 18,047,121 – 18,047,238
Length 117
Sequences 5
Columns 117
Reading direction reverse
Mean pairwise identity 96.07
Mean single sequence MFE -25.80
Consensus MFE -23.34
Energy contribution -23.54
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -1.35
Structure conservation index 0.90
SVM decision value 0.65
SVM RNA-class probability 0.812447
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 18047121 117 - 27905053
GCUACAGCACAAGAAGGAAAUGCAAAAAAUGACACGAAAUCGUUAAGCGACAACCAGCAGCAACUUCGACUUGAACUCUGCACUCUGCCGCAGAGCUGACACUUGCAACUCCUCCCC
....((((.((((..(((..(((..........(((....)))...((........)).)))..)))..))))...(((((........)))))))))................... ( -25.60)
>DroSec_CAF1 89513 111 - 1
G------CACAAGAAGGAAAUGCAAAAAAUGACACGAAAUCGUUAAGCGACAACCAGCAGCAACUUCGACUUGAACUCUGCACUCUGCCGCAGAGCUGACACUUGCAACUCCUCCCC
(------((((((..(((..(((..........(((....)))...((........)).)))..)))..))))..((((((........))))))........)))........... ( -24.50)
>DroSim_CAF1 91452 117 - 1
GCUACAGCACAAGAAGGAAAUGCAAAAAAUGACACGAAAUCGUUAAGCGACAACCAGCAGCAACUUCGACUUGAACUCUGCACUCUGCCGCAGAGCUGACACUUGCAACUCCUCCCC
....((((.((((..(((..(((..........(((....)))...((........)).)))..)))..))))...(((((........)))))))))................... ( -25.60)
>DroEre_CAF1 92707 117 - 1
GGUACAGCACAAGAAGGAAAUGCAAAAAAUGACACGAAAUCGUUAAGCGACAACCAGCAGCAACUUCGACUUGAACUCUGCACUCUGCCGCAGAGCUGACACUUGCAACUCCACCCC
.((.((((.((((..(((..(((..........(((....)))...((........)).)))..)))..))))...(((((........)))))))))))................. ( -26.50)
>DroYak_CAF1 93668 117 - 1
CGUACAGCACAAGAAGGAAAUGCAAAAAAUGACACGAAAUCGUUAAGCGACAACCAGCAGCAACUUCGACUUGAACUCUGCACUCUGCCGCAGAGCUGACACUUGCAGCACCACCCC
.((.((((.((((..(((..(((..........(((....)))...((........)).)))..)))..))))...(((((........)))))))))))................. ( -26.80)
>consensus
GCUACAGCACAAGAAGGAAAUGCAAAAAAUGACACGAAAUCGUUAAGCGACAACCAGCAGCAACUUCGACUUGAACUCUGCACUCUGCCGCAGAGCUGACACUUGCAACUCCUCCCC
......(((((((..(((..(((..........(((....)))...((........)).)))..)))..))))..((((((........))))))........)))........... (-23.34 = -23.54 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:30:55 2006