Locus 6786

Sequence ID 3R_DroMel_CAF1
Location 17,914,456 – 17,914,575
Length 119
Max. P 0.590209
window11014

overview

Window 4

Location 17,914,456 – 17,914,575
Length 119
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 84.06
Mean single sequence MFE -30.47
Consensus MFE -18.46
Energy contribution -19.10
Covariance contribution 0.64
Combinations/Pair 1.26
Mean z-score -2.03
Structure conservation index 0.61
SVM decision value 0.11
SVM RNA-class probability 0.590209
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 17914456 119 - 27905053
CCCUUUACGAUUGGUA-UGGUUAUGCCACCCAAAUGUUCAUUGAAUUUUAAGCCAGUCGAGCGUUUUUCUGAAUUUAGCACAUCCGCAAGGGCAGUCCAUUGAUUUCAAUGCAUUGUAUU
.((((..((((((((.-(((.....)))..(((.......)))........)))))))).(((..(..(((....)))...)..)))))))(((((.(((((....))))).)))))... ( -28.00)
>DroSec_CAF1 2999 118 - 1
CCCUUUACGAUUGGUA-UGGUUAUGCCACCCAAAUGUUCAUUGAAUUAUAAGCCAGUCGAGCGUU-UGCUGAAUCUAGCACAUCCGCAAGGGCAAUCCAUUGAUUUCAAUGCAUUGUAUU
.((((..((((((((.-(((.....)))..(((.......)))........)))))))).(((..-(((((....)))))....)))))))(((((.(((((....))))).)))))... ( -32.80)
>DroSim_CAF1 1503 107 - 1
CCCUUUACGAUUGGUA-UGGUUAUGCCACCCAAAUGUUCAUUGAAUUUUAAGCCAGUCG------------AAUUUAGCACAUCCGCAAGGGCAAUCCAUUGAUUUCAAUGCAUUGUAUU
.((((..((((((((.-(((.....)))..(((.......)))........))))))))------------......((......))))))(((((.(((((....))))).)))))... ( -26.70)
>DroEre_CAF1 2419 112 - 1
CCCUUUAUGAUUGCGACUGCCUAUGCCGCCCAAAUGUUCACUGGAUU-UAAGCCAGUCGAGCAUUU-GCUGAAUUUAGCACAUCCGCAAG-UCAUACCAUUGAUUUCAGU-----GUAUC
.....((((((((((..((.(((.......((((((((((((((...-....))))).))))))))-).......)))..))..))).))-))))).(((((....))))-----).... ( -31.74)
>DroYak_CAF1 3119 119 - 1
CCCUUUAUGAUUGGCA-UGGUUAUGCCACCCAAAUGUUCAUUGAAUUGUGAGCCAGUGGAGCGUUUCUCUGAACUUGGCACAUCCGCAAGGACAUUCCAUUGAUUUCAGUGCAAUGUAUA
...........(((((-(....)))))).(((...((((((......))))))...))).(((((.(.(((((..(((....(((....)))....))).....))))).).)))))... ( -33.10)
>consensus
CCCUUUACGAUUGGUA_UGGUUAUGCCACCCAAAUGUUCAUUGAAUUUUAAGCCAGUCGAGCGUUU_GCUGAAUUUAGCACAUCCGCAAGGGCAAUCCAUUGAUUUCAAUGCAUUGUAUU
.((((..((((((((..(((.....))).......((((...)))).....))))))))..................((......))))))(((((.(((((....))))).)))))... (-18.46 = -19.10 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:29:51 2006