| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 17,886,834 – 17,886,924 |
| Length | 90 |
| Max. P | 0.772248 |
| Location | 17,886,834 – 17,886,924 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 72.39 |
| Mean single sequence MFE | -24.52 |
| Consensus MFE | -10.03 |
| Energy contribution | -11.03 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.97 |
| Structure conservation index | 0.41 |
| SVM decision value | 0.53 |
| SVM RNA-class probability | 0.772248 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 17886834 90 + 27905053 GCU----------AGCUCCAUCAAUAAUCGAGUCAAGUGUUUUGGAGUGA-------CUUUUGUCGGUUC-GGC--UUGAAUUCUCCGAUUC----AUUCUCCAUUUUGGCUCU- ...----------................((((((((.....(((((.((-------(....)))(..((-((.--..(....).))))..)----...))))).)))))))).- ( -22.80) >DroSec_CAF1 28346 100 + 1 GCUAGCGAGCUCUAGCUCCAUCAAUAAUCGAGUCAAGUGUU-CGGAGUGA-------CUUUUGUCGGUAC-GGC--UUGGUUUCUCCGAUUC----AUUCUCCAUUUUGGCUCUU ....(.((((....)))))..........((((((((((.(-(((((.((-------((...((((...)-)))--..)))).))))))..)----))........))))))).. ( -30.40) >DroSim_CAF1 31804 101 + 1 GCUAGCGAGCUCUAGCUCCAUCAAUAAUCGAGUCAAGUGUUUUGGAGUGA-------CUUUUGUUGGUAC-GGC--UUGGUUUCUCCGAUUC----AUUCUCCAUUUUGGCUCUU ....(.((((....)))))..........((((((((((..((((((.((-------((...((((...)-)))--..)))).))))))..)----))........))))))).. ( -28.30) >DroEre_CAF1 29270 82 + 1 ------------------CAUCAAUAAUCGAGUCAAGUGCU-UAGAGCGA-------CUUUUGUUGGUUUCGGC--UCGGUUUCUCCGAUUC----AUUCUCCAUUUUGGCUCU- ------------------...........((((((((.(((-.(((.(((-------(....)))).))).)))--((((.....))))...----.........)))))))).- ( -22.70) >DroYak_CAF1 29876 86 + 1 ------------------CAUCAAUAAUCGAGUCAAGUGUU-UGGAGCGA-------CUUUUGUCGGUUU-GGC--UUGGUUUCUCCGAUUCAUACAUUCUCCAUUUUGGCUCUU ------------------...........((((((((....-((((((((-------(....))))((.(-(..--((((.....))))..)).))...))))).)))))))).. ( -27.30) >DroAna_CAF1 25759 85 + 1 ----------------UCCAUCAAUAAUCGAGUCGAGUGU--CGGACUGAUGUGCCGCUUCUGCCGUUGC-UUCUGUCGGUUUCCCC----------UUAUUCAUGUCAGCUUU- ----------------(((..((....(((...))).)).--.)))((((((((........((((..((-....))))))......----------.....))))))))....- ( -15.61) >consensus ________________UCCAUCAAUAAUCGAGUCAAGUGUU_UGGAGUGA_______CUUUUGUCGGUUC_GGC__UUGGUUUCUCCGAUUC____AUUCUCCAUUUUGGCUCU_ .............................((((((((.....(((((...............(((......)))..((((.....))))..........))))).)))))))).. (-10.03 = -11.03 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:29:44 2006