Locus 677

Sequence ID 3R_DroMel_CAF1
Location 2,450,768 – 2,450,859
Length 91
Max. P 0.716266
window1070

overview

Window 0

Location 2,450,768 – 2,450,859
Length 91
Sequences 5
Columns 114
Reading direction reverse
Mean pairwise identity 81.15
Mean single sequence MFE -39.70
Consensus MFE -23.55
Energy contribution -24.03
Covariance contribution 0.48
Combinations/Pair 1.20
Mean z-score -1.99
Structure conservation index 0.59
SVM decision value 0.39
SVM RNA-class probability 0.716266
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 2450768 91 - 27905053
----------CU----ACCCCGGAGAAAUGUCCGU---UUUGUCUCG-GGCUUUUCCCCGGGGAUCUGG-----GGCUGUCAAAGCGGCAACGGAAGUUAGGCCACCCACUCGG
----------..----.((((((.((((.(((((.---.......))-))).)))).))))))...(((-----((((.....)))(((.((....))...))).))))..... ( -42.80)
>DroSec_CAF1 9773 92 - 1
----------CU----CCCCCGGAGAAAUGUCCGU---UUUGUCUCG-GGCUUUUCCCCGGGGAUCUGGG----GGCUGUCAAAGCGGCAGCGGAAGUUAGGCCACCCACUCGG
----------..----.((((((.((((.(((((.---.......))-))).)))).))))))...((((----(((((((.....)))(((....))).)))).))))..... ( -43.20)
>DroSim_CAF1 6506 92 - 1
----------CU----CCCCCGGAGAAAUGUCCGU---UUUGUCUCG-GGCUUUUCCCCGGGGAUCUGGG----GGCUGUCAAAGCGGCAGCGGAAGUUAGGCCACCCACUCGG
----------..----.((((((.((((.(((((.---.......))-))).)))).))))))...((((----(((((((.....)))(((....))).)))).))))..... ( -43.20)
>DroEre_CAF1 10824 92 - 1
----------CU----UCCCCAGAGAAAUGUUCAU---UUUGUCUCU-GGAUUUGCCCCGGGGAUCUGGG----GGCUGUCAAAGCGGCAGCGGAAGUUGGGCCACCCACUCGG
----------((----((((((((((...(.....---)...)))))-)).....((((((....)))))----)((((((.....))))))))))).((((...))))..... ( -38.00)
>DroAna_CAF1 10324 114 - 1
UUCCAGCUCUCUAUGGACUCUUGGCAAAUUUUCUUUUUUUUGUCUCAGGGGCUUUCCCCAGGGAUCUCGGCUCGGCCUGUCAAAGUGGCAGCGGAUGUUAGGCCACCCACUCGG
.((((........)))).....((((((..........))))))...((((....)))).(((..((..((((.((.((((.....)))))).)).))..))...)))...... ( -31.30)
>consensus
__________CU____ACCCCGGAGAAAUGUCCGU___UUUGUCUCG_GGCUUUUCCCCGGGGAUCUGGG____GGCUGUCAAAGCGGCAGCGGAAGUUAGGCCACCCACUCGG
.................((((((.((((.(((................))).)))).))))))...((((.....(((.....)))(((.((....))...))).))))..... (-23.55 = -24.03 +   0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:03 2006