Locus 6755

Sequence ID 3R_DroMel_CAF1
Location 17,814,330 – 17,814,436
Length 106
Max. P 0.882992
window10973

overview

Window 3

Location 17,814,330 – 17,814,436
Length 106
Sequences 5
Columns 114
Reading direction reverse
Mean pairwise identity 81.23
Mean single sequence MFE -22.03
Consensus MFE -15.50
Energy contribution -14.50
Covariance contribution -1.00
Combinations/Pair 1.39
Mean z-score -2.03
Structure conservation index 0.70
SVM decision value 0.92
SVM RNA-class probability 0.882992
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 17814330 106 - 27905053
CAUACA-AAUAUUAAAA-AAAGGAGGGGA---ACCUAAAUAAAAA-AGGCAGCAAGUAAUAUGAGAGUGGCAAGGGCGCGG--AUAGAGGACAUUAAAGUUCCAGCUGCCGGUG
..(((.-..........-.....(((...---.))).........-.((((((.............(((.(...).)))..--...(.((((......))))).)))))).))) ( -22.60)
>DroSec_CAF1 102854 106 - 1
CAUACA-AAUAUUAAAA-AAAGGAGGGGA---ACCUAAAUAAAAA-AGGCAGCAAGUAAUACGAGAGUGGCAAGGGCGCGG--AUAGAGGACAUUAAAGUUCCAGCUGCCGGUG
..(((.-..........-.....(((...---.))).........-.((((((..((..(((....)))((....))))..--...(.((((......))))).)))))).))) ( -24.00)
>DroSim_CAF1 112528 106 - 1
CAUACA-AAUAUUAAAA-AAAGAAGGGGA---ACCUAAAUAAAAA-AGGCAGCAAGUAAUAUGAGAGUGGCAAGGGCGCGG--AUAGAGGACAUUAAAGUUCCAGCUGCCGGUG
..(((.-..........-.....(((...---.))).........-.((((((.............(((.(...).)))..--...(.((((......))))).)))))).))) ( -22.50)
>DroEre_CAF1 108685 106 - 1
UAUACA-AAUAUUAAAAAAAAGGAGGGGA---ACCGAAAUAAAAA-AGGCAGCAAGUAAUAUGAGAAUGGCUGGGGCGCGG--AUGGAGGACAUUGAAGUUCCAGCUGCAG-CA
......-.................((...---.))..........-..((.(((.....(((....)))((((((((...(--(((.....))))...))))))))))).)-). ( -23.60)
>DroWil_CAF1 132065 106 - 1
CAAACAAAAUA--AAAA-AAGGGAGAAGAAAUAUCUAAAUAAACGUCAGCGGCAAGCAAUAUUGCAAUG-----GGCGGGGGAAGGGGGGAUAUUAAAAUUGCAGCUGCUGUAA
...........--....-...........(((((((.......((((....((((......))))....-----))))..........)))))))....((((((...)))))) ( -17.43)
>consensus
CAUACA_AAUAUUAAAA_AAAGGAGGGGA___ACCUAAAUAAAAA_AGGCAGCAAGUAAUAUGAGAGUGGCAAGGGCGCGG__AUAGAGGACAUUAAAGUUCCAGCUGCCGGUG
.......................(((.......)))...........((((((..((..(((....)))......))...........((((......))))..)))))).... (-15.50 = -14.50 +  -1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:29:11 2006