Locus 6752

Sequence ID 3R_DroMel_CAF1
Location 17,792,588 – 17,792,680
Length 92
Max. P 0.652693
window10968

overview

Window 8

Location 17,792,588 – 17,792,680
Length 92
Sequences 4
Columns 93
Reading direction reverse
Mean pairwise identity 81.33
Mean single sequence MFE -17.27
Consensus MFE -9.90
Energy contribution -11.03
Covariance contribution 1.13
Combinations/Pair 1.11
Mean z-score -2.10
Structure conservation index 0.57
SVM decision value 0.25
SVM RNA-class probability 0.652693
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 17792588 92 - 27905053
UAUGUUUCCCAACUCACCUGCUCAUUGCUCGACAUCUCGAACAUGCAAUUAGCACCAAAAAA-AGGUAAUAACUUGGCUGCUUCAUUCAGUCA
..((((.((.........((((.(((((((((....))))....))))).))))........-.)).))))...((((((.......)))))) ( -17.97)
>DroEre_CAF1 86790 93 - 1
UAAGUUUCCCAACUCACCUGCUCACUGCUCGACAUCUCGAACAUGCAAUUAGCACCAAAAAAAAGGUAAUAACUUGGCUGCUUCAUUCAGUCA
.(((((.............(((.(.(((((((....))))....))).).)))(((........)))...)))))(((((.......))))). ( -15.10)
>DroYak_CAF1 87376 93 - 1
UAAGUUUACCAACUCACCUGCUCAUUGCUCGACAUCUCGAACAUGCAAUUAGCACCAAAAAAAGGGUAAUAACUUGGCUGCUUCAUUCAGUCA
.(((((((((........((((.(((((((((....))))....))))).))))..........))))..)))))(((((.......))))). ( -21.37)
>DroAna_CAF1 88808 70 - 1
----------AACUCACCUG---GCUGUUCGACAUCUCGAACAUGCAAUUAGCACCGAAAAA----------UGUUGCUGCCUCAUUCAAUCA
----------.........(---(((((((((....))))))).(((((.............----------.))))).)))........... ( -14.64)
>consensus
UAAGUUUCCCAACUCACCUGCUCACUGCUCGACAUCUCGAACAUGCAAUUAGCACCAAAAAA_AGGUAAUAACUUGGCUGCUUCAUUCAGUCA
..................((((.(((((((((....))))....))))).))))....................((((((.......)))))) ( -9.90 = -11.03 +   1.13)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:29:07 2006