Locus 675

Sequence ID 3R_DroMel_CAF1
Location 2,445,052 – 2,445,155
Length 103
Max. P 0.608348
window1068

overview

Window 8

Location 2,445,052 – 2,445,155
Length 103
Sequences 3
Columns 114
Reading direction forward
Mean pairwise identity 85.67
Mean single sequence MFE -29.43
Consensus MFE -21.19
Energy contribution -21.87
Covariance contribution 0.67
Combinations/Pair 1.12
Mean z-score -2.02
Structure conservation index 0.72
SVM decision value 0.15
SVM RNA-class probability 0.608348
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 2445052 103 + 27905053
UGGAGACACCCAAGAAGGUUGAGGGGAAGUGAUCCAACAGUGGGAUACCCUGUACUUUAUAGUGGGUCUUGGUCAAUAGAGGAAUCAGAAGGCAAUAACAU----------A-A
.(....)(((((..(((((..((((......((((.......)))).))))..)))))....)))))....(((....((....))....)))........----------.-. ( -22.70)
>DroSec_CAF1 4053 114 + 1
UGGAGACACCUAAGAAGGUUGGGAGAAAGUGAUCCAACAGUGGGAUACCCAGUAUUCUAUUGUUGGUCUUGGUCAAUAGAGGAAUCAGAAGGCAAUUUCAGACCAAAAGCUAAU
((....))(((((.....)))))....(((((.(((((((((((((((...)))))))))))))))))((((((....((....)).((((....)))).))))))..)))... ( -35.30)
>DroSim_CAF1 835 114 + 1
UGGAGACACCUAAGAAGGUUGGGAGAAAGUGAUCCAACAGUGGGAUACCCAGUAUUCUAUUGUUGGUCUUGGUCAAUAGAGGAAUCAGAAGGCAAUUUCAGACAAAAAGCUAAU
((....))(((((.....)))))....(((((.(((((((((((((((...)))))))))))))))))...(((....((....)).((((....)))).))).....)))... ( -30.30)
>consensus
UGGAGACACCUAAGAAGGUUGGGAGAAAGUGAUCCAACAGUGGGAUACCCAGUAUUCUAUUGUUGGUCUUGGUCAAUAGAGGAAUCAGAAGGCAAUUUCAGAC_AAAAGCUAAU
((....))(((.....((..((((.........(((((((((((((((...)))))))))))))))))))..)).....)))................................ (-21.19 = -21.87 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:00 2006